Jeotgalibaca porci: G7058_04435
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Entry
G7058_04435 CDS
T06496
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
jpo
Jeotgalibaca porci
Brite
KEGG Orthology (KO) [BR:
jpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
jpo03009
]
G7058_04435 (rlmD)
Enzymes [BR:
jpo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G7058_04435 (rlmD)
Ribosome biogenesis [BR:
jpo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G7058_04435 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PCMT
Methyltransf_23
Methyltransf_11
RrnaAD
Methyltransf_4
PrmA
TRAM
UPF0020
Cons_hypoth95
TehB
TOH_N
Motif
Other DBs
NCBI-ProteinID:
QIK51370
UniProt:
A0A6G7WGJ6
LinkDB
All DBs
Position
complement(859458..860861)
Genome browser
AA seq
467 aa
AA seq
DB search
MKKKTYPTEVLDVTIKRITPEGYGYVKHIHPPERGSNGRGLTINVTNVVPGDVVRVTIPN
AKGRRKAVVEYDELLQPGPTRNLDIPTHEAVSGGTPLQYMKYAAQLEYKMDMVKTYLQEK
DFDISVVKPIIGMDEPNRYRNKMELTFGPNGELGMHQQGNFRRVIDLEDSILAPQIMVDV
KHTISKWQKDYDLPGYEKTTQEGLLRNLLMRYSFATDELMIILYVTEGPGKYQAAADDLV
TRLTTQFKNLVSLQWVEHASSAERIQADETFILHGRDYINDELNGFKYRIWPDTFFQANP
IQAEKLVELALEMADVNEDMRVLDLFCGVGTFSLPLAKNSKDLAGIEIVENSIISARRNA
EDNGLANTFFMTRDARQGLIDLKEAWGHPDLLVLDPPRSGAGGKVMRSIGRFGTDKVVYI
SCSPKSLADDLTWLRDFGYELITVQPVDQFPHTTHVETILLMQKVKG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaaacatatccaacagaagttttggatgtcacaattaaaaggattaccccc
gaaggatacggttatgttaaacatatccatccacccgaaagagggtcgaacggaagaggt
ttaacaattaatgttacgaatgttgttccgggagatgttgtacgtgtaacgattcccaat
gcgaaagggcgtcgtaaagcagttgtggagtatgacgaattactgcaaccaggaccgact
cggaatttagacattccaacccacgaagctgtctctggtgggactccacttcagtacatg
aaatacgctgcacagctagaatataaaatggacatggtcaaaacctatttacaagagaaa
gattttgacatatcagtcgtaaaaccgattatcggaatggacgaaccgaatcgttaccgt
aacaaaatggaattaacctttggacctaatggtgagcttggtatgcatcagcaagggaac
ttccgccgtgttatcgatttggaagattctattttagccccgcaaattatggtagacgtg
aagcacactatcagtaaatggcaaaaagattacgatttaccaggttatgaaaagacaacc
caagaagggctattgcgtaacttattaatgcgttactcctttgcgaccgatgaactgatg
attatcctttacgtgacagaaggaccaggaaaatatcaagcagcggctgacgatttagtg
acacgattgaccacgcaatttaagaacctagtcagtctgcagtgggttgaacatgcctct
tcagcggagagaatccaagcagacgagacgtttattttgcacggacgtgattacattaat
gatgaactaaacggcttcaaataccgtatctggccagatacattcttccaggcgaatccg
atccaagccgagaaacttgtcgaacttgctttggaaatggcggatgtaaacgaagacatg
cgcgttctggatcttttctgtggcgtcggtacattcagtttaccattagcaaaaaatagc
aaagacttagcgggaatcgaaattgtcgagaattccatcatttctgcaagacgaaatgcg
gaagataacggactagctaatacattctttatgacccgcgatgcacgtcaaggtttaatc
gacctgaaagaggcttggggacaccctgatttactcgttctggacccaccaagaagtgga
gcaggcggaaaagtcatgcgtagtattggccgtttcggaacagacaaagtagtgtatatt
tcatgtagtccaaagagtttagcggacgacttaacgtggttacgcgacttcggttacgaa
ctcattactgtgcaacccgttgaccaattcccgcatacaacgcatgttgagacgatatta
ttgatgcaaaaggtaaaagggtaa
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