Juglans regia (English walnut): 108979555
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Entry
108979555 CDS
T05245
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108979555
09122 Translation
03013 Nucleocytoplasmic transport
108979555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108979555
03041 Spliceosome [BR:
jre03041
]
108979555
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108979555
Spliceosome [BR:
jre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108979555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
TSP_NTD
Motif
Other DBs
NCBI-GeneID:
108979555
NCBI-ProteinID:
XP_018805801
UniProt:
A0A2I4DF75
A0A833TCF4
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All DBs
Position
15:5337230..5346011
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AA seq
482 aa
AA seq
DB search
MDEGMMEEGAMVVDEGDAQRRTGSTEHEILQGSRAAVEEIMAKMLSIKTQGHPKSLLREL
VTQMFLHFITLRQVNRSILLEEDHAKAETEHAKAPVDFATLQLHNLTYERNRYVKAIKAC
KDFRSKYPNIEMVSEEDFIRDAPEDIKTTAFSNDSAHDLMMKRLHFELFQRKELCKLHKK
LESQKKRLLDTTANQKKFMSSLPSHLKSLKKASVPIQNQLGVLHTKKLKQHHLAELLPPP
LYVIYSEFLAQKEAFGENIDLEIEGSVKDAQSFAHQQANKDTGISTNVESIRLDDDAPDE
EDDGQRRRKRPKGVPSKENLDQEGLYQVHPLRTIIHIYDDEVSDPKSAKLINLKFEYLLK
LNVVCVGIEGSHDGAENSMLCNLFPDDTGVELPHQSAKLSVGDALSFDKRITSRPYKWAQ
HLAGIDFLPEVSPLLTTHGTPSGETAKSDAVISGLSLYRQQTRIQTVVQRIRSLKKAQPA
LI
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagggatgatggaggagggggcgatggtggtggacgagggagatgcgcagcgc
aggacggggagcacggagcatgaaattctgcaagggagcagggccgcggtagaggagatc
atggccaagatgctctccatcaagacacaaggccacccaaaatctctactcagggagctc
gtcactcaaatgttccttcatttcatcaccctccgccaggtgaaccgttccatcttgcta
gaagaagatcatgcaaaagctgagacagagcacgcgaaggcaccggtggacttcgcaaca
cttcagcttcacaatttgacgtatgaaagaaaccgctacgttaaagcaatcaaggcttgc
aaagatttcaggtcaaaatatcctaatattgaaatggtatccgaggaagattttatccgt
gatgcacctgaagacattaaaaccacggcattttccaatgacagtgcgcacgatctgatg
atgaaaaggctccattttgagctatttcagcggaaagagctatgcaaacttcacaagaag
ctggaatcacagaagaaaagactcttggatacaactgcaaaccaaaagaaatttatgtca
agtctaccatcgcaccttaagtcccttaagaaagcatccgtgccgatacagaaccagtta
ggggttctgcataccaagaaactaaagcaacaccatttggcagagttgcttccacctcct
ctctatgtgatttattctgagttcttggcacagaaggaagcatttggtgaaaatattgac
ttggagatagaaggaagtgtgaaggatgctcaatcttttgcccaccagcaagcaaataag
gacactggcatatctaccaatgtagagagtattagattggatgatgatgcaccagatgag
gaagatgatggccagaggaggagaaagcggccaaagggggttccgagcaaggagaacctt
gatcaggagggattatatcaagttcacccacttaggacaatcattcatatttatgatgat
gaggtgtctgatccgaagtctgcaaaacttatcaatctgaagtttgaatacttgttaaag
ttgaatgttgtatgtgtcgggattgaagggtcccacgatggagctgagaatagcatgtta
tgcaacttattccccgatgacactggcgttgaacttcctcaccagtcagccaagctctct
gttggtgatgccctctcatttgacaaaaggataacatcgcggccgtataaatgggcccag
catttggcaggaattgactttttgccagaggtgtctccattgcttactacccatggaact
ccaagtggtgaaacagctaaaagtgatgctgttatatctggtctttctctgtatcgccag
cagactcgcatccagacagttgtgcaaagaattcgttccttgaaaaaggctcagccggct
cttatttga
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