KEGG   Juglans regia (English walnut): 108979555
Entry
108979555         CDS       T05245                                 
Name
(RefSeq) THO complex subunit 5B
  KO
K13174  THO complex subunit 5
Organism
jre  Juglans regia (English walnut)
Pathway
jre03013  Nucleocytoplasmic transport
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108979555
  09122 Translation
   03013 Nucleocytoplasmic transport
    108979555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    108979555
   03041 Spliceosome [BR:jre03041]
    108979555
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     108979555
Spliceosome [BR:jre03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108979555
SSDB
Motif
Pfam: FmiP_Thoc5 TSP_NTD
Other DBs
NCBI-GeneID: 108979555
NCBI-ProteinID: XP_018805801
UniProt: A0A2I4DF75 A0A833TCF4
LinkDB
Position
15:5337230..5346011
AA seq 482 aa
MDEGMMEEGAMVVDEGDAQRRTGSTEHEILQGSRAAVEEIMAKMLSIKTQGHPKSLLREL
VTQMFLHFITLRQVNRSILLEEDHAKAETEHAKAPVDFATLQLHNLTYERNRYVKAIKAC
KDFRSKYPNIEMVSEEDFIRDAPEDIKTTAFSNDSAHDLMMKRLHFELFQRKELCKLHKK
LESQKKRLLDTTANQKKFMSSLPSHLKSLKKASVPIQNQLGVLHTKKLKQHHLAELLPPP
LYVIYSEFLAQKEAFGENIDLEIEGSVKDAQSFAHQQANKDTGISTNVESIRLDDDAPDE
EDDGQRRRKRPKGVPSKENLDQEGLYQVHPLRTIIHIYDDEVSDPKSAKLINLKFEYLLK
LNVVCVGIEGSHDGAENSMLCNLFPDDTGVELPHQSAKLSVGDALSFDKRITSRPYKWAQ
HLAGIDFLPEVSPLLTTHGTPSGETAKSDAVISGLSLYRQQTRIQTVVQRIRSLKKAQPA
LI
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggacgaagggatgatggaggagggggcgatggtggtggacgagggagatgcgcagcgc
aggacggggagcacggagcatgaaattctgcaagggagcagggccgcggtagaggagatc
atggccaagatgctctccatcaagacacaaggccacccaaaatctctactcagggagctc
gtcactcaaatgttccttcatttcatcaccctccgccaggtgaaccgttccatcttgcta
gaagaagatcatgcaaaagctgagacagagcacgcgaaggcaccggtggacttcgcaaca
cttcagcttcacaatttgacgtatgaaagaaaccgctacgttaaagcaatcaaggcttgc
aaagatttcaggtcaaaatatcctaatattgaaatggtatccgaggaagattttatccgt
gatgcacctgaagacattaaaaccacggcattttccaatgacagtgcgcacgatctgatg
atgaaaaggctccattttgagctatttcagcggaaagagctatgcaaacttcacaagaag
ctggaatcacagaagaaaagactcttggatacaactgcaaaccaaaagaaatttatgtca
agtctaccatcgcaccttaagtcccttaagaaagcatccgtgccgatacagaaccagtta
ggggttctgcataccaagaaactaaagcaacaccatttggcagagttgcttccacctcct
ctctatgtgatttattctgagttcttggcacagaaggaagcatttggtgaaaatattgac
ttggagatagaaggaagtgtgaaggatgctcaatcttttgcccaccagcaagcaaataag
gacactggcatatctaccaatgtagagagtattagattggatgatgatgcaccagatgag
gaagatgatggccagaggaggagaaagcggccaaagggggttccgagcaaggagaacctt
gatcaggagggattatatcaagttcacccacttaggacaatcattcatatttatgatgat
gaggtgtctgatccgaagtctgcaaaacttatcaatctgaagtttgaatacttgttaaag
ttgaatgttgtatgtgtcgggattgaagggtcccacgatggagctgagaatagcatgtta
tgcaacttattccccgatgacactggcgttgaacttcctcaccagtcagccaagctctct
gttggtgatgccctctcatttgacaaaaggataacatcgcggccgtataaatgggcccag
catttggcaggaattgactttttgccagaggtgtctccattgcttactacccatggaact
ccaagtggtgaaacagctaaaagtgatgctgttatatctggtctttctctgtatcgccag
cagactcgcatccagacagttgtgcaaagaattcgttccttgaaaaaggctcagccggct
cttatttga

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