Juglans regia (English walnut): 108981155
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Entry
108981155 CDS
T05245
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
jre04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108981155
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108981155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108981155
04121 Ubiquitin system [BR:
jre04121
]
108981155
03400 DNA repair and recombination proteins [BR:
jre03400
]
108981155
Enzymes [BR:
jre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108981155
Spliceosome [BR:
jre03041
]
Complex B
Other components
Prp19 complex
108981155
Complex C
Prp19-CDC5 complex
108981155
Ubiquitin system [BR:
jre04121
]
Ubiquitin ligases (E3)
U-box type E3
108981155
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108981155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
DSE1_N
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR41
CFAP251_N
Beta-prop_Aladin
NBCH_WD40
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_DCAF4
zf-Nse
U-box
ASA1
PAC11
PAS_11
WD40_like
WDR54
Tricorn_2nd
PUMA_CC
V_ATPase_I_N
Motif
Other DBs
NCBI-GeneID:
108981155
NCBI-ProteinID:
XP_018807788
UniProt:
A0A2I4DKX4
LinkDB
All DBs
Position
12:complement(23443495..23458015)
Genome browser
AA seq
524 aa
AA seq
DB search
MNCSISGEVPEQPVVSKKSGLLYEKRLIERHISDFGKCPITGEPLTLDDIVPIATGKIVK
PRPLQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQADRQIPMSASAVVTANAPVMSNGKRAAEDEEFGPGGKRIRPGISASIIA
ELTDCNAALSQQRKKRQIPPTVATIDALERYTQISSHPLHKTSKPGIVSLDIHFEKDIIA
TGGLDTNAVLFDRSSGQILSTLSGHAKKVTSLKFVARGDLFLTASADKTVRLWQESDDGN
HNCRHILKDHTAEVQAITVHATNNYFVTASLDSTWCFYELSSGLCLTQVVDASDSNGYTS
AAFHPDGLILGTGTSEAVVKIWDVKSQANVARFDGHVGAVTSISFSENGYFLATAAHDGV
KLWDLRKLRNFRTFAPYDSDTPTNSVEFDSSGSYLAIAGSDIRVYQVANVKSEWNCIKTF
PDLSGTGKAACAKFGPDAKYMAVGSMDRNLRIFGLPGEDGPLES
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatctccggcgaggtgccggaacagcccgtggtgtcgaagaaatctgga
cttctatacgagaagcggttaatcgagaggcacatctcggattttggaaaatgcccaatt
acgggggaaccacttacactggatgacattgttccaatcgcgacaggcaagatagtaaag
cccagacctctacaagctgctagcatacctggcatgctcggaatgttccagaatgaatgg
gatggtttgatgctatccaatttcgcattggaacaacaactacatacagcgaggcaagag
ctaagtcatgctctataccagcatgatgctgcttgccgtgtgattgcaagacttaaaaaa
gaaagggatgaagcgaggtcattgcttgctcaggctgataggcagatacccatgtcagca
tctgcggtagttacagcaaacgctcctgtgatgagcaatggtaaaagagctgctgaggat
gaggagtttggccctggtggaaagagaatacgacctggtatatctgccagtattattgct
gaactgactgactgtaatgcagctctttcacagcagcgcaaaaagcgccagatacctcca
acagtggctaccattgatgctctggaaaggtatactcagatttctagtcatccgctccac
aaaacaagcaaaccaggcattgtgtctcttgatatccattttgaaaaggacataattgca
actggagggcttgacacaaatgcagtactttttgatcgatcatcagggcagatcttatca
acactcagtggtcatgctaaaaaggttaccagtttaaaatttgttgctcggggtgattta
ttcttaactgcctcagctgacaagactgtacgtttgtggcaagagtctgatgatgggaac
cataactgtagacacatcttaaaggatcatactgccgaggtgcaagcaattacagtccat
gcaacaaataactactttgtgactgcttctcttgatagcacatggtgcttttatgaactt
tcttctggattatgtctgacacaggttgtggatgcctcagattctaatggctatacttct
gcagcatttcatcctgatggtctaattcttggaacaggcacttctgaagctgttgttaaa
atttgggatgtgaaaagtcaggcaaatgttgccagatttgatggacatgttggggctgta
acttcaatatctttctctgaaaatggctacttccttgcgactgcagctcatgatggtgtt
aagctgtgggatttacgaaaattaaggaacttccggacatttgctccatatgattcagac
accccaacaaactctgtggagtttgacagtagtggaagttaccttgcaatagctggatcg
gatataagagtttaccaagttgcaaatgttaagtcggaatggaattgtatcaaaactttt
cctgatttgtctggcacaggtaaagcagcttgtgcaaaatttgggccagatgcgaaatat
atggcagtaggatcgatggatagaaacctccgcattttcggcctacccggtgaggatggt
ccattagaatcttaa
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integrated database retrieval system
