Juglans regia (English walnut): 108981226
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Entry
108981226 CDS
T05245
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X5
KO
K13217
pre-mRNA-processing factor 39
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108981226
Spliceosome [BR:
jre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108981226
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_2
NRDE-2
TPR_16
TPR_MalT
UTP6_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
108981226
NCBI-ProteinID:
XP_018807879
UniProt:
A0A2I4DL48
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All DBs
Position
10:36319163..36338036
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AA seq
828 aa
AA seq
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MGDSETVVSEPSAMMDYTSTGYSDASSNVVPNTGASPSEATGVFSASTAPADISSAIRGG
SDLGDGNVHGTDPDPNIQEAHVITTSEANLAAEVANTSEKVTDLENAATEFSQAGGNISS
LNGTDGIRVENGHVSDHVGRSADEQQFDGFVPAVSAEEDRLWNIVRANALDFNAWTSLIE
ETEKVAQENILKIRKAYDAFLAEFPLCYGYWKKYADHEAHLGSVEKVVEVYERAVQGVTY
SVDIWLHYCIFAISTYGDPETIRRLFERGLAYVGTDYLSFTLWDKYIEYEYMQQEWGRLA
MIYTRILEYPNQQLDRYFNSFKELAGSRPLSELRTAEEAAAAAAAALSEASVQANEGEVH
PDATEQSPKLVSSGLTEAEELQKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLN
VAELENWHSYLDFMEREGDFNKVVKLYERCLIACANYPEYWMRYVLCMEASGMLDLANNA
LARASQVFVKRQPEIHLFAARFKEQIGDIPGSQAAYQLVHTEISPGLIEAIIKHANMEYR
LGNLEDAYSLYEQAIAIERGKEHSQTLPMLYAQYSRFVYMISGNEEKAREILLQALEHVQ
PSKPLLEALIHFEAIQSLPKRINYLDSLVVKFIVPDLESPNVAGPADREELSCIYLEFLN
VFGDVQSIKKAEDRHAKLFLPHQSTSELKKRHAEDFLASDKAKIAKSYSVPSPAQSLMGA
YPSAQSQWTAGYGLQHQAWPAATQGPVQQWAPGNTQQAAYGAYSGYGSSYTNPQTAASAP
QTAAYGAYPTTYPAQAFPQQSYAQPTAVVAAPLQQPASVPQAYYGSYY
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagcgaaacagtcgtatctgagccttctgccatgatggactatacatccact
ggctattctgatgccagctcaaatgttgttcccaacactggggcttccccttctgaagct
actggggttttttctgcatctactgcaccggctgatataagttctgctattcgtggtggt
tctgatttgggagatggaaatgtacatggtacagatcctgatcccaatatacaagaagca
catgtgattacaacatctgaagctaacctagctgctgaagttgctaatactagtgagaaa
gtcactgatctggaaaatgctgcaacagaattctctcaagctggtggtaatatatcatct
ctgaatggtactgatggtataagagttgagaatggacatgtttcagatcatgtaggtaga
tctgcggatgagcaacagtttgatggttttgtaccagctgtgtctgctgaagaagatcga
ctgtggaacattgtgagggctaatgctttagattttaatgcatggacttccctaattgaa
gagaccgagaaggtggcgcaggagaacattttgaaaatccgaaaagcttatgatgctttt
ttggcagaatttcctttgtgttatggttattggaaaaagtatgcagaccatgaggctcat
ctaggctctgttgagaaagtagtggaggtttatgaacgggcagtacaaggagtgacatat
tcggtggatatttggttgcattattgtatatttgccattagcacatacggggatccagaa
accatccgtaggctctttgaacgaggattagcttatgttggaacagattacctgtcattc
acactttgggataaatacatcgaatatgagtacatgcagcaagagtggggccgtcttgct
atgatttacaccaggattttggagtatccaaatcaacaattggatcgctattttaacagc
ttcaaggagttagctggaagtcgacctttgtctgaattaaggacagctgaggaagctgct
gctgctgcagcagcagcactttcagaggctagtgtccaagccaatgagggagaggttcat
cctgatgctacggaacaatctcctaaacttgtaagttctggcttaacggaggcagaggag
ttgcagaagtatatcgccatcagagaagagatgtataagaaggctaaagagttcgattct
aagatcattggttttgaaacagcaattaggagaccctactttcatgtgcggcctctaaat
gttgcagagcttgaaaattggcatagctatttggattttatggaaagggaaggagacttt
aacaaggtggtcaagttatatgaaagatgtttgattgcatgtgccaattatcccgagtat
tggatgcgttatgttttatgcatggaagctagtggaatgttggatctcgcaaataatgca
cttgctcgtgcatctcaagtgtttgtcaagagacaaccagagattcacctttttgctgct
cggtttaaggagcaaattggggatatacctggttctcaagctgcctatcaacttgttcat
actgaaatctctcctggtctcattgaagcaattattaagcatgcaaatatggaatatcgg
ctggggaatctggaagatgcctactcattgtacgaacaggccattgctattgaaagagga
aaagaacattcacaaacattaccgatgttgtatgcacaatattctcggtttgtatacatg
atttctggtaatgaagaaaaggctagggaaattctacttcaagcacttgagcatgtgcaa
ccgtccaaaccacttcttgaggctttaatacattttgaggcaattcagtccttaccaaag
agaatcaattatctagattcgttggttgttaagttcatagttcctgacctagagagcccc
aatgttgctggtccagctgatagggaagagctttcttgcatttatttggagtttctgaat
gtctttggggatgtacaatccatcaagaaggctgaggatcggcatgctaagcttttcttg
cctcatcagagcacttcagagttgaaaaaacgccatgcagaggattttctagcatcagat
aaggccaaaatagccaagtcttattctgttccttcacctgcgcagtccttgatgggtgca
tatccaagtgcacaaagccaatggactgctggttatggtttgcagcatcaagcttggcca
gctgctacgcaaggaccagttcaacagtgggcccctggcaatacacaacaggctgcatac
ggtgcatatagtggttatggaagtagttacactaatccacaaacggcagcatcagcacca
caaactgccgcttatggggcttatcctactacatatcctgcgcaggctttcccacaacaa
agttatgcacagcccactgcagtagtagccgccccactgcagcaacccgcgtcagttccg
caggcctattatgggagttactactga
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