Juglans regia (English walnut): 108981456
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Entry
108981456 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108981456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108981456
03009 Ribosome biogenesis [BR:
jre03009
]
108981456
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108981456
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
108981456
Complex B
108981456
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
Helicases
108981456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
108981456
NCBI-ProteinID:
XP_018808180
UniProt:
A0A833UBM6
A0A2I4DM01
LinkDB
All DBs
Position
9:complement(12847209..12851852)
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AA seq
662 aa
AA seq
DB search
MNHYDHRYGDPTSYRERRSDLIGPPPPVGQPLAGGYGRGGPVPYGVPPPPVYGRGGGGSA
PPGAGNFNGYPPFQPPVARFEIGRGGGNTTSGHVGAGDRRVGNVGRGGSGGRGFDSGRGG
RVGISRGGRGLGGSDGVGRIGNRSFGGGRGGSAGFSSGRGGGRGFEGRGGGRGGIHGGGG
SRGDLDNISLPKQDFGNLVPFEKNFYIESPSVRAMSEQEAMVYRARRDITVEGRDVPKPI
RMFQEASFPGYCLDVIAKLGFVEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL
VHVSAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFSSRANIRSTCIYGGAPKGPQIRD
LKRGVEIVIATPGRLIDMLEAQHTNLRRVSYLVLDEADRMLDMGFEPQIRKIVAQIRPDR
QTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANQSIVQVVEVVMEGEKYNRLIKLL
KEMMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKSQVERDWVLAEFKSGRSPIM
TATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKFARE
LTKILQEAGQVASPSLSALARSAGSSLGGSGGNFRSRGRGGYGNRALISGSNTIPIGAKR
AW
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaatcactacgaccaccggtacggcgatccgacctcctatcgcgagcgtcgtagtgac
ctaatcggcccacctcctcctgtgggtcagccactggcaggcggttatggccgcggtgga
cctgttccatacggagtcccgcctcctccggtctatggaagaggtgggggaggatcggca
ccacccggcgccggtaatttcaacgggtacccgccgtttcagcctcccgttgcccgattc
gaaatcggccgaggcggtggaaatacgacgagtggacatgttggagctggtgataggaga
gtagggaacgtaggccgtggtggtagtggtggaagaggctttgattcgggtcgtggtggc
agagttggtataagccgtggtggtcgtggtctgggtggttctgatggagtgggccggatt
gggaataggagctttggtggaggtcgtggtgggagtgccggatttagcagtgggagaggt
ggtgggaggggatttgaggggcgaggtggtggaaggggaggtatacatgggggtgggggt
tccagaggggacttggacaacatttctttgcccaagcaggattttgggaatttggtccct
ttcgagaagaatttttacattgagagtccttcggtgcgggcgatgagtgagcaggaagct
atggtttatcgggctaggcgggatattacggttgaagggcgtgatgtgccaaagccaatt
aggatgtttcaggaagctagtttccctggttattgcctggatgtgattgcaaaactgggt
tttgttgagccaacagcaattcaggctcaaggatggccaatggctcttaagggtagggat
ttaattggtattgctgagactggttctggtaagactttggcatatctgcttcctgctttg
gtccatgttagtgcacagcctcgattggtacaaggtgaaggtcccattgtattggtgtta
gcacctactagagagctagcagttcagattcaagaagaagctgtgaaattttcttcacgt
gctaatattagaagtacttgcatatatggtggtgctccgaaaggacctcaaatccgtgac
cttaaaagaggagtggagattgtcattgctacacctggtagactgatagatatgttggag
gcccaacacacaaacttgcgaagagtgagttaccttgtgttggatgaggccgatcgaatg
ttggacatgggatttgagcctcaaattaggaaaattgtagcccagatcaggccagataga
cagacattgtattggagtgccacatggccaagggaggttgaaactctagcaaggcagttt
ttacgcaatgcatataaggtcattattggatcaccggatctgaaagcaaaccaatctata
gttcaagttgttgaagttgtgatggagggagagaaatataacaggctgatcaaactgctt
aaagaaatgatggatgggagccgaattctgatatttatggagacaaaaaaaggatgtgac
caagttacaaggcaattgagaatggatggatggccggctctatccattcatggtgataaa
agccaggttgaaagggactgggttcttgctgagtttaaaagtggcagaagtcctataatg
actgccactgatgttgctgcccggggtcttgatgtgaaagacataaaatgtgtgatcaat
tatgattttccatcgagcctcgaagattacgtccacaggattggccgaactggtcgtgca
ggtgcaaaagggactgccttcaccttcttcacacatgcaaatgcaaagtttgctagggaa
ctgaccaagatcttgcaagaagcagggcaggttgcaagtccctcattgtctgccttggcc
cgctcagctggttctagtctgggaggatctgggggtaacttccgctccagaggacgagga
gggtatggaaatcgagcactaatttctggctctaatactattcctattggtgcaaagaga
gcttggtag
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