KEGG   Juglans regia (English walnut): 108981459
Entry
108981459         CDS       T05245                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03082  ATP-dependent chromatin remodeling
jre03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108981459
   03083 Polycomb repressive complex
    108981459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:jre03036]
    108981459
Enzymes [BR:jre01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108981459
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108981459
   HDAC complexes
    Sin3A-HDAC complex
     108981459
    BRAF-HDAC complex
     108981459
    REST complex
     108981459
    SHIP complex
     108981459
    MiDAC complex
     108981459
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108981459
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108981459
  Chromatin remodeling factors
   NuRD complex
    108981459
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108981459
NCBI-ProteinID: XP_018808184
UniProt: A0A2I4DM03 A0A833USR4
LinkDB
Position
9:complement(12797927..12801220)
AA seq 463 aa
MGDSREGASLPAAAAPDATKRRVSYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYALH
RRMEISRPFPAGPADIRRFHSEEYVDFLASVSPDTLSDNAFSRHTKRFNVGEDCPVFDGL
FGFCQSSAGGSIGAAVKLNRGDSDIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV
HRRVLYVDIDVHHGDGVEEAFYATDRVMTVSFHKFGDFFPGTGHIKDTGWGPGKNYALNV
PLNDGLDDESFRGLFRPIIHKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLR
FLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVE
PCNMENLNLPKDMEKIRIMLLEQLSRIPHVPSVPFQTTPPVSQVPEEAEEDMDRRPKCRI
WNGEDYDSDPDEDEKPRHIEPNSEMRNVVDEMDEDKSNEHPPS
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgggtgatagcagagaaggcgcctcgctcccggccgcagcggcaccggacgccacgaag
cgccgagtgagctacttctacgaaccctgcatcggggactactactatggtcagggccac
ccgatgaagccccacaggatccgcatggcccacaacctcattgttcactacgccctccac
cgtcgcatggagatcagccgccccttccccgctggtcccgcagacatccgccgctttcac
tccgaggagtacgtggacttcctcgcctccgtctcccccgataccctctcagacaacgcc
ttctcccgccacactaagcgcttcaacgtcggcgaggactgcccagtcttcgatggcctc
tttggcttctgccaatcctccgccggtggctccatcggcgccgccgtcaagctcaaccgt
ggcgactccgatatcgcccttaattgggcgggtggtcttcaccatgccaagaagtccgag
gcctccggcttctgctacgtcaatgatattgtgctcggtattcttgagctgctcaaagtt
cataggcgtgtactttatgtcgatattgatgtccaccatggagatggagttgaggaggca
ttttatgccacggatagagtcatgactgtctcgttccataaatttggagatttctttccg
gggactgggcacattaaggatacagggtgggggcctgggaagaattatgccctgaatgtc
ccattaaatgatggattggatgatgagagtttccgtggtctgtttaggcccattattcac
aaagtcatggaggtctatcagccagatgcggttgttcttcaatgtggagcagattcactg
tctggtgacaggttggggtgcttcaacttgtctgtgaagggccatgcagattgcctccgt
tttcttagatctttcaatgtacctttaatggtcttgggtgggggagggtatacaatccgc
aatgttgcccgttgctggtgctacgagacagcggttgcagttggagtggagcctgataat
aaattgccttacaatgaatattatgaatattttggtccagattatactcttcatgtagaa
ccatgcaacatggagaatttaaacttgcccaaagacatggagaaaattaggattatgctg
ctagagcaactttccagaataccccatgtacctagtgtaccttttcagacgacaccacct
gtgtcacaagttccagaagaggcggaagaggacatggaccgaaggccaaaatgtcgcata
tggaatggtgaggactatgactctgaccctgatgaagatgagaagcctcgacatattgag
ccaaattctgagatgagaaatgtagtcgatgaaatggatgaagataaaagcaatgagcat
ccaccatcttga

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