Juglans regia (English walnut): 108981789
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Entry
108981789 CDS
T05245
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108981789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108981789
03041 Spliceosome [BR:
jre03041
]
108981789
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108981789
Spliceosome [BR:
jre03041
]
Complex B
Other components
Prp19-related factors
108981789
Complex C
108981789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_12
TPR_15
TPR_8
TPR_19
ARM_TT21
NRDE-2
DUF5955
Motif
Other DBs
NCBI-GeneID:
108981789
NCBI-ProteinID:
XP_018808585
UniProt:
A0A2I4DN59
LinkDB
All DBs
Position
3:19587581..19598429
Genome browser
AA seq
913 aa
AA seq
DB search
MIVGKEMYPSQEDLLYEEEVLRNPFSLKLWWRYLIARSDAPFKKRFVIYERALKALPGSY
KLWYAYLRERLDLVRNIPVTHSLFQALNNTFERALVTMHKMPRIWIMYLQTLTDQKLLVR
TRHTFDRALCALPVTQHDRIWEPYLVFVSQKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
VNSSLWQEAAERLASVLNDDEFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHDKARDIFEEGIMTVVTVRDFSVIFDSYSQFEESML
AHKMEGVSSSDEEEEGEEENDVDDDEDVRLDLNLSVAKLEKKILNGFWLHDAKDIDLRIA
RLEDLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPNKAVG
KPHTLWVNFARLYENHKDIANARVIFDKAVQVNYKTVDHLATLYCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAADGSEPVQIKLYKSLRLWTFYVDLEESLGTLESTRSVYER
ILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYADLEKSLGEIDRSRGIF
VFASQFADPRSDGDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYMMQK
DQRLNLDDARDKLKQAGVAEDEMAALERQLAPAASNAKDSSRKVGFVSAGVESESDGGIK
ASANHEDIELPEGSDSEEDEKVEIAQKDVPSAVFGGLVHKRDEAEKDGEEQNKDKDGDSR
LGALERIKRQKRA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcggtaaggagatgtatccctcgcaggaggacttgctctacgaagaggaggtt
ctccgcaacccattcagccttaagctctggtggcgctacctcatcgcgcgttccgatgcc
cccttcaagaagcgattcgtcatctacgaacgagccctcaaggctcttcctggtagctac
aagctctggtacgcctatcttcgcgaacgtctcgacctcgttcgcaacatcccagtcact
cactctctcttccaagccctaaacaacactttcgaacgcgcccttgtcactatgcacaaa
atgccccgcatttggattatgtaccttcaaaccctcaccgaccagaaattgctcgtccgg
actcgccacaccttcgacagggcactctgcgccctcccggttacccagcacgaccgcatt
tgggaaccctacctcgtgttcgtcagccaaaagggtgtccctatagagacctctcttagg
gtttatcgcaggtacttgaaatacgaccctactcatattgaagatttcattgaatttttg
gttaattcgagtctttggcaagaggcagcggagcggttagcttcagttttgaacgacgat
gagttttattctattaagggaaagaccaaacataggctgtggttggagttgtgtgatttg
cttaccaggcatgccactgaagtctctggattgaatgtggatgccataattaggggtggg
attaggaagttcaccgatgaggttgggcggttgtggacctcgcttgctgagtattatatt
aggaggaatttgcacgataaggctagggatatatttgaggagggtatcatgaccgtggtt
actgtgagggattttagtgtgattttcgattcgtactcgcagtttgaagagagtatgctt
gctcataagatggaaggtgtgagttcaagtgatgaggaggaggagggtgaagaagaaaat
gatgttgatgatgatgaagatgttcggttggatttgaacttatcagtggccaaacttgag
aagaagatacttaatgggttctggttacatgatgccaaggatatagatttaaggattgcc
cgattagaggatctcattaatagacgacccgaattggctaatagtgttctgttacgccaa
aatcctcataatgtggaacagtggcaccgaagggtgaagctgtttgagggtaatcccacg
aagcaaatattgacttacactgaggcagtgaggacggttgaccctaataaagccgtggga
aagcctcatacgttgtgggttaattttgcccgactgtatgagaaccacaaagatattgcc
aatgctagagttatatttgacaaggctgtgcaagtgaactacaagaccgtagatcatttg
gctactttgtactgtgaatgggctgaaatggaactgaggcataagaatttcaaaggagca
cttgacttgatgaggcgggctacagcagagccctcagtagaggttaaacgaagagtggct
gctgatggttctgaaccagttcagataaagctctacaagtccttgagactttggaccttc
tacgttgatttggaagagagcttgggtaccttggaatctacccgatcagtgtacgagcgg
atactggatctaagaatagccacgccacaaattattctcaactatgcatttctgctggaa
gagcataaatactttgaagatgcattcaaggtatatgaaagaggtgtgaagattttcaag
tatccacatgttaaagacatatgggttacatatctatcaaaatttgtgaagagatatgga
aagacaaaactggagcgggcaagagagctgtttgagcatgctgttgaaacagcccctgct
gatgcagtaaaacccttgtatcttcaatatgcaaagctggaggaggattatggtctggca
aagcgagcaatgaaagtctatgatcaagcaactaaagctgttccaaacaatgagaaattg
agcatgtatgaaatttacattgctcgagcagcagagatctttggtgttccaaaaacaagg
gaaatatatgagcaagcaatagagtctggtctcccagacaaagatgtgaaggccatgtgc
ttgaagtatgcagaccttgaaaagagcttgggtgaaattgatcgttctcgtggaatattt
gtatttgcttcccaatttgcagatccacgttctgatggggatttctggaataaatggcat
gagtttgaggtgcagcatggaaatgaagataccttcagggaaatgcttcgcattaaaagg
agtgtttctgcgagctatagtcagacgcattttatattgcccgagtatatgatgcaaaag
gatcagaggttgaaccttgatgatgcaagagacaagttgaaacaagcaggggtcgctgaa
gatgaaatggctgctctcgaaaggcagttggctcctgcagccagcaatgctaaagacagc
agcagaaaagtgggctttgtgagtgctggtgttgaatcagagtctgatggtggcataaaa
gcttctgcaaatcatgaagatatagaactgccagaaggaagtgattcagaagaggatgaa
aaggttgaaattgcgcagaaagatgttccatcagcagtttttggaggtttagttcataag
agagatgaggctgagaaagatggggaagagcagaacaaagataaggatggtgacagccgc
ctaggtgctcttgagagaataaagaggcaaaagcgagcgtga
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