Juglans regia (English walnut): 108981916
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Entry
108981916 CDS
T05245
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre04120
Ubiquitin mediated proteolysis
jre04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108981916
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108981916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
jre04121
]
108981916
Enzymes [BR:
jre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108981916
Ubiquitin system [BR:
jre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108981916
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108981916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_TEP1_C
zf-C3HC4
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_EML
zf-C3HC4_3
WD40_like
zf-RING_2
Beta-prop_WDR75_1st
zf-RING_UBOX
zf-C3HC4_4
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
zf-RING_5
Beta-prop_SCAP
DUF1664
U-box
zf-RING_10
YbfN
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
108981916
NCBI-ProteinID:
XP_018808711
UniProt:
A0A834D4W8
A0A2I4DNI5
LinkDB
All DBs
Position
3:complement(9336016..9343698)
Genome browser
AA seq
673 aa
AA seq
DB search
MGDTSLAAQALVPTVKRDPSPDPNTEPPPLPHPPPDQTAPEAVGGELDKDTLCPICMQII
TDAFLTACGHSFCYMCIVTHLRNKSDCPCCARYLTTNHIFPNFLLDKLLKKNSARQVAKS
ASPFEHLRHALQQGCEVSIKELDGLLSLLAKKKRKMEQEEAETKLQILLDFLHCLRKQKL
EEMNEIQADLLYIKEDINAVKRYRTELYRAKERFSVKLRMLDDDPIAAKAWASLTDMHGS
GIISSPHCLQGQMEPQNKKAQVSLQVFQRKDGNNGSDQQSVAPSALALARKKRVHSQFND
LQDCYLQKRRNWNGESHKGEESNTNPIKREGYHPGLDDFQSVMTTFTRYSRLRVIAELGH
DDLFHPANIVSSIEFDRDDEFFATAGVSRRIKVFEFSSVVNEPADVHCPVAEMSTRSKLS
CLSWNKYTKNYIASSDYEGIVTVWDITNRQSVMEYEEHEKRAWSVDFSRTEPSMLVSGSD
DCKVKIWCTKQEASVLNIDMTANICSVKYNPGSSIHVAVGCADHLIHYYDLRNVSQPLHV
LSGHEKAVSYVKFLSNNELASASIDSTLRLWDVKKNLPLHTYRSHTNEKNFVGLTANSQF
ICCGSETNQVFVYHKAISRPMAWHKLGSPEGDDGEGVDDDDGSYFISAVCWKSDSPTVLA
ANSEGKLKVLVLA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacctcactggcggcacaggcactcgtccctaccgtcaaacgcgacccctcg
ccggaccccaacaccgaaccaccgccgctaccgcatcccccgcctgatcagactgctccg
gaggccgtaggtggtgagctggacaaggacacgttgtgcccaatatgcatgcagatcata
acggacgcgtttctcaccgcctgtggccacagtttctgttacatgtgcattgtcacccac
ctgagaaacaagagcgactgtccttgctgcgctcgctacctcaccaccaaccatatcttc
cccaattttctactcgacaagttgttgaagaaaaattctgctcgtcaggtagcgaagtct
gcctcaccttttgaacatcttcgtcacgcattacaacagggttgtgaggtgtcaattaag
gagctagatggcctgctgtctctacttgcgaagaagaagagaaaaatggaacaagaagaa
gctgagacgaaattgcagattttgctagacttcttgcattgtctgcggaagcaaaagctt
gaagagatgaatgagatacaagctgacctcctgtatatcaaggaggacatcaatgctgtc
aagagatatagaacagaactatacagggcgaaagaaagattctcagttaaactgaggatg
cttgatgatgatcctattgcagcaaaagcatgggcttcattgactgatatgcatggaagt
ggcattatctccagtcctcattgtctgcaagggcagatggaaccacagaacaaaaaggct
caagtaagcctccaggtattccaaagaaaggatggtaataatggttccgatcagcaatct
gttgctccatcagcattagctttagcaagaaaaaagcgggtccattcacagtttaatgac
ctacaagactgttatttgcaaaagcggcgaaactggaatggagaatctcacaaaggggaa
gaaagcaacacaaatcctataaaaagagaaggttatcatccaggtcttgatgatttccaa
tccgttatgactacctttacacgatacagtcgattgagggttattgctgaactagggcat
gatgacctttttcaccctgccaatatagtgtcaagtatagaatttgatcgagatgatgag
ttttttgccactgctggtgtttcacggcgcatcaaggttttcgagttctcctcggtggtg
aatgaaccagcagatgtccactgccctgttgcagagatgtccacgcgatcaaagcttagt
tgcttgagctggaataagtacacaaaaaattatatcgctagcagtgattatgaggggata
gtaactgtttgggacataaccaatcgtcagagtgtgatggaatatgaggagcatgaaaag
cgagcttggagtgttgatttttcacgcactgaaccatcaatgcttgtatcaggcagtgat
gactgcaaggttaaaatttggtgcacaaagcaagaagcaagtgttcttaacatcgatatg
actgcgaatatttgttctgtgaagtataatcctggatcaagcattcacgtggcagtgggt
tgtgcagatcatctcattcactattatgacttaagaaatgtcagccaaccactacatgta
cttagcgggcacgaaaaagcagtttcatatgtaaaattcttgtctaacaatgaacttgct
tctgcatctattgacagcacgttgcggttgtgggatgtaaagaaaaatctgccactgcac
acatatagaagtcacacgaatgagaagaattttgtgggtctcacagctaatagccagttc
atatgttgtggtagcgagacaaatcaagtatttgtctatcacaaggctatctctagacct
atggcttggcataagcttggttctccagaaggagatgacggcgaaggtgtcgacgacgat
gacggatcgtactttatcagtgctgtttgttggaagagtgatagcccaacagtattggct
gcaaatagtgaaggaaaacttaaagtgcttgtacttgcataa
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