Juglans regia (English walnut): 108983126
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Entry
108983126 CDS
T05245
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108983126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108983126
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
108983126
Complex B
108983126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
108983126
NCBI-ProteinID:
XP_018810212
UniProt:
A0A2I4DSU4
A0A833X854
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All DBs
Position
13:complement(1865002..1883183)
Genome browser
AA seq
1061 aa
AA seq
DB search
MANNPRFSGVQPLQPPIVGSVEPPRSFVAPMSSQFRQVVPAQQSQQFNPVPSQHFYPVGL
GAPRMNVGLPHHHALQPQFSQSMQQFPPRPGQPGQPGHATLPSQAIPLPIAQPNLHITSE
KPIPQINSQTPNSYSPVLGGPERPLTSSYTFASSSYGQPHTNFSASTQYQFTPQMHAPDI
SSGRQLGLSSESQGTATVAQYAKQPLVPTTVTSATIIQPNTTRESPTDWIEHTSADGRRY
YHNKKTRQSSWEKPLELMTPIEMLTGTWSATLLRGRTCCGYLLLSLATILLEYCRSMSLT
SPKLFGLGGREKADASTNWKEYTSPDGRKYYYNKVTKESKWSIPEELKLAREQVEKASFM
GTQPDTFEIPLVSTTVPPSVVKAPSGGETSSSPAQGVASSPASEGHDVAAGDLKPPLLSE
TPASTVVASTTDENANGTQTLLNVAALSDAVPENSEAAVTIASTIHAPMENADNLSAEDV
PNSADGAPAKVVEGVDAIEALEEVKKDEIGEKLNDIGLEAKSVDPEPMIYANKLEAKNAF
KALLESANVGSDWTWDRAMRVIINDRRYGALKTLGERKQVFNEFLSQRKKQEAEERRIKL
KKAREEFKQMLEESSELTSSTRWSKAVSMFENDERFKAVERDRERRDLFDNYLGELKEKE
RARAEEERKRNVMEYRQFLESCDFIKADSQWRKLQDRLEADERCSRLEKMDRLDIFMEYT
HDLEKEEEERRKIQKEELRKVERKNRDEFRKLMEEHVTAGTLTAKTHWRDYCMKVKDLLA
YTEVASNTSGSTPKELFQDVLEELEKQYHEDKTRIKDAVKLGKILLSSTWVLEDFKFAIS
KDFSPPISDVNLKLIFDELLERVREKEEKEAKKRKRLADDFFHLLSSIKEITASSKWEDC
KQLFADSREFSSIGEESLCREIFEQYISQLKEQAKEHERKRKEEKAKKEKEREEKEKRKV
KQRREKEEGREREKDEEDNIKKQRKRHQSSEDIVDENEKDRSRKSHGSSDHKKSRRHASA
PESDDESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDRQSW
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcctcggttttctggtgtacagcctcttcagcctcctatagttggttcg
gtggaaccccctcgaagttttgttgcaccaatgtcttctcagttccgacaggtggttcca
gcacagcagtcacaacaattcaatcctgttccttctcaacatttttatcctgttggcctt
ggtgctccacggatgaatgttggactacctcatcatcatgctctgcaaccccaattttct
caatcaatgcagcaatttcctccaagacctggtcaacctggtcagcctggtcatgctaca
ctcccatcacaggcaattccattgccaattgctcagccaaacttgcacattacttcagaa
aaaccaatacctcagataaattctcaaactccaaatagctattcacctgttttgggtggc
ccagaaagacctctcacttcatcatatacttttgcatcatcttcttatggtcaaccgcat
acaaattttagtgcctccacccagtatcagtttacacctcaaatgcatgcacctgatata
tcttctgggagacaacttggtttatcatctgaaagccagggtactgccactgttgcacag
tatgcaaaacaacctttagttcccaccaccgtgacatcggcaacaatcatccaacctaac
accacaagagaatccccaacagattggatagagcatacttctgctgatggaagaagatac
tatcacaacaagaaaacaaggcaatctagttgggagaagcctttagaactgatgacgcca
attgagatgcttacaggtacatggtctgctactctattgagaggtaggacatgctgtggg
tatttgctgctttctctagctactatattgcttgaatattgccggagtatgtcgttaacc
tcgcccaaactctttggcctgggagggagagagaaagcagatgcttcgactaactggaag
gaatatacaagtcctgatggaaggaagtactactacaacaaggttaccaaggaatccaaa
tggtcaatccctgaggagctgaagttggctcgtgagcaagtagaaaaggcatcttttatg
ggaacacagccagacacatttgagattcctcttgtctcaactactgtgcctccctctgtg
gttaaagcaccatctggtggagaaacctcatcttccccagctcagggggtagcatcaagc
ccagcttcagaggggcatgatgttgctgctggtgatctaaaacctcccttgctttctgaa
acaccggcttcaactgttgtagcttctactacagatgaaaatgcaaatggaacgcagaca
cttctaaatgttgcagcactttcagatgctgttccagaaaattctgaagccgctgtcacc
attgccagtaccattcatgcaccaatggagaatgccgataatctttcagctgaggatgtt
cctaattctgcagatggagctcctgcaaaagttgtggagggagttgatgcgattgaagcc
ttggaggaagtgaaaaaagatgaaataggggaaaaactgaacgatattggattggaagcg
aaatcagttgatcctgaacccatgatttatgccaataagctggaggctaaaaatgcattc
aaagcacttttggagtctgcaaatgttgggtctgactggacctgggatcgggctatgaga
gtaataatcaatgatagaagatatggtgctttgaagacacttggagagcggaagcaagtt
ttcaacgagttcctaagtcaaagaaaaaaacaagaagctgaggaaaggcgcatcaaactg
aaaaaagcgcgggaagaatttaaacaaatgttggaagagtcatcagagctgacatcatcc
acaagatggagcaaagcagtgagtatgtttgagaatgatgaacgttttaaagctgttgaa
cgagatagagagcgcagggatttgtttgataactacttgggggaacttaaagagaaggag
cgagcaagggcagaagaagaacgcaaacggaatgtaatggaatataggcaatttttggaa
tcttgtgacttcatcaaggcagacagccaatggcgaaaacttcaagatcgcttggaggct
gatgaaagatgttcacgtcttgaaaaaatggatcgcttggatatttttatggaatataca
catgatttagagaaggaagaggaggagcggaggaagatacagaaggaagaattgagaaag
gtggagcgtaaaaaccgtgatgaattccgcaaattgatggaagagcatgttactgctggc
actcttacagctaaaacccactggcgtgattattgcatgaaggtcaaagatttgcttgca
tatacagaagtcgcatcaaacacctcgggttcaactccaaaagaattatttcaagatgtt
cttgaggagctagagaaacaatatcatgaggacaaaactcgaataaaagatgcagtgaag
ctgggaaagattctgctgtcatctacatgggtacttgaagacttcaagtttgctatttca
aaggatttttctccaccaatatcagatgtcaacttaaagctgatatttgatgagttacta
gaacgagttagggagaaggaagagaaagaagctaaaaagcgtaaacgccttgcagatgac
ttctttcatttacttagttcaataaaggaaataactgcatcttcaaagtgggaggactgc
aaacaactgtttgcagatagtcgagagttcagttccattggagaagaaagcctttgcagg
gagatatttgagcaatatatatcacaactaaaggaacaggcaaaagaacacgagcgaaaa
cggaaagaggaaaaggcaaagaaggaaaaagagagagaggaaaaagagaagagaaaagtc
aagcagagaagagaaaaagaggaaggacgtgaacgagaaaaagatgaagaagacaatatc
aagaaacaaaggaagcggcatcaaagttctgaggatattgtagatgaaaatgagaaagat
cggtccaggaagtcccatgggtccagtgaccacaagaaatcgagacggcacgcatccgct
cctgaatcagatgatgagagcaggcataaacgacataagagagaccaccggaatggttct
cgtagatatggggatcatgaggaacttgaagatggggaatttggtgaggataggcaaagt
tggtag
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integrated database retrieval system
