Juglans regia (English walnut): 108983961
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Entry
108983961 CDS
T05245
Name
(RefSeq) THO complex subunit 4D-like
KO
K12881
THO complex subunit 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108983961
09122 Translation
03013 Nucleocytoplasmic transport
108983961
03015 mRNA surveillance pathway
108983961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108983961
03041 Spliceosome [BR:
jre03041
]
108983961
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108983961
TREX complex
108983961
Spliceosome [BR:
jre03041
]
Complex C
Other components
EJC/TREX
108983961
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108983961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
108983961
NCBI-ProteinID:
XP_018811304
UniProt:
A0A833U675
A0A2I4DVX9
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All DBs
Position
10:3929451..3936303
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AA seq
293 aa
AA seq
DB search
MATALDLSLDDLIKNRGSRERGRGRGRARRGRGLGRASNGGRMPGAVRRGPLAVNARPSS
YTIAKSIRRPRTFPWQHDLFEESLRAAGIPGIGIGTKLYISNLDYGVTNEDIRELFCEIG
DLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEIVGANAEMPVS
ARVNVTGVNGRRRRTVVMTPGAGPIGGSAAVKRGSGRNRLGGTSSRGGGSGHAQVQDLGR
GRGGSRGRGRGWGRGRGRVWGRGRGSENNQPVEMSVDELNEDLDNYHAVGKHT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctttggatctgtccctcgatgatcttataaagaacagaggatcccgtgag
agaggtagaggacgaggtagggcccgccgtggtcgtggactgggcagggcatctaatggt
ggaagaatgcctggggcagttcgaagaggtccccttgcagtgaatgctcggccatcatct
tatacaattgccaagtctatccgcagacccaggactttcccatggcagcatgatttgttt
gaagagagccttagagctgcagggataccagggataggaattggcacaaaattatatatt
tctaacttggattatggagtgactaatgaagatataagggaacttttctgcgaaattgga
gacctgaaacgatatgcagttcattatgacaaaaatggtcgcccaaatggctcagctgaa
gttgtgtataccagaagaagtgatgcagttgcagctcttaagcggtataataatgtcctc
ttggatggtaaacccatgagaattgaaattgtaggtgccaatgcagaaatgcctgtttca
gctcgtgtgaatgtcactggagtaaatggacggaggagaaggactgttgttatgacgcct
ggagctggtccaattggaggctctgctgctgttaagcgtggctctggtcggaatcgtctt
gggggtacaagtagccgtggcggtggcagtggccatgctcaggtacaggatctgggtcga
ggtcggggtgggagccgaggccggggccggggctggggccgtggccgaggccgagtctgg
ggacgggggcgtggctccgaaaataatcaacctgttgagatgtctgttgatgaacttaac
gaggacctggataactatcatgctgtaggcaaacatacttga
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