KEGG   Juglans regia (English walnut): 108983961
Entry
108983961         CDS       T05245                                 
Name
(RefSeq) THO complex subunit 4D-like
  KO
K12881  THO complex subunit 4
Organism
jre  Juglans regia (English walnut)
Pathway
jre03013  Nucleocytoplasmic transport
jre03015  mRNA surveillance pathway
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108983961
  09122 Translation
   03013 Nucleocytoplasmic transport
    108983961
   03015 mRNA surveillance pathway
    108983961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    108983961
   03041 Spliceosome [BR:jre03041]
    108983961
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108983961
    TREX complex
     108983961
Spliceosome [BR:jre03041]
 Complex C
  Other components
   EJC/TREX
    108983961
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108983961
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 108983961
NCBI-ProteinID: XP_018811304
UniProt: A0A833U675 A0A2I4DVX9
LinkDB
Position
10:3929451..3936303
AA seq 293 aa
MATALDLSLDDLIKNRGSRERGRGRGRARRGRGLGRASNGGRMPGAVRRGPLAVNARPSS
YTIAKSIRRPRTFPWQHDLFEESLRAAGIPGIGIGTKLYISNLDYGVTNEDIRELFCEIG
DLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEIVGANAEMPVS
ARVNVTGVNGRRRRTVVMTPGAGPIGGSAAVKRGSGRNRLGGTSSRGGGSGHAQVQDLGR
GRGGSRGRGRGWGRGRGRVWGRGRGSENNQPVEMSVDELNEDLDNYHAVGKHT
NT seq 882 nt   +upstreamnt  +downstreamnt
atggctactgctttggatctgtccctcgatgatcttataaagaacagaggatcccgtgag
agaggtagaggacgaggtagggcccgccgtggtcgtggactgggcagggcatctaatggt
ggaagaatgcctggggcagttcgaagaggtccccttgcagtgaatgctcggccatcatct
tatacaattgccaagtctatccgcagacccaggactttcccatggcagcatgatttgttt
gaagagagccttagagctgcagggataccagggataggaattggcacaaaattatatatt
tctaacttggattatggagtgactaatgaagatataagggaacttttctgcgaaattgga
gacctgaaacgatatgcagttcattatgacaaaaatggtcgcccaaatggctcagctgaa
gttgtgtataccagaagaagtgatgcagttgcagctcttaagcggtataataatgtcctc
ttggatggtaaacccatgagaattgaaattgtaggtgccaatgcagaaatgcctgtttca
gctcgtgtgaatgtcactggagtaaatggacggaggagaaggactgttgttatgacgcct
ggagctggtccaattggaggctctgctgctgttaagcgtggctctggtcggaatcgtctt
gggggtacaagtagccgtggcggtggcagtggccatgctcaggtacaggatctgggtcga
ggtcggggtgggagccgaggccggggccggggctggggccgtggccgaggccgagtctgg
ggacgggggcgtggctccgaaaataatcaacctgttgagatgtctgttgatgaacttaac
gaggacctggataactatcatgctgtaggcaaacatacttga

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