Juglans regia (English walnut): 108985141
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Entry
108985141 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108985141
09122 Translation
03013 Nucleocytoplasmic transport
108985141
03015 mRNA surveillance pathway
108985141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108985141
03041 Spliceosome [BR:
jre03041
]
108985141
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108985141
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108985141
Spliceosome [BR:
jre03041
]
Complex C
Other components
EJC/TREX
108985141
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108985141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-GeneID:
108985141
NCBI-ProteinID:
XP_018812870
UniProt:
A0A2I4E0E7
A0A833UEM1
LinkDB
All DBs
Position
8:1241259..1247509
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEAHAPTSAVKVNGEGAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLKECNFPAICIHSGMSQEERLTRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggagaacgatgggtacgaggaagagcttgttgactacgatgacgaa
gaagcccatgccccaacttccgctgtcaaagttaacggcgaaggcgccaagaagggctat
gtaggaattcacagctcaggattcagggacttccttttgaagccagagcttcttcgagct
attgtggactcgggatttgagcatccttctgaagtgcaacacgaatgtatccctcaagcc
atcctgggcatggatgtcatttgccaagctaagtctgggatggggaaaaccgctgttttt
gttctttcaacattgcagcagattgaacccgttgcaggacaagtttctgcaattgtgctg
tgtcatacaagggagttagcttaccagatttgtcacgagttcgagagattcagtacgtac
ttacctgatctcaaggttgctgtcttctatggtggtgtcaatatcaaagttcacaaggat
ttgctgaaaaacgaatgcccccacattgttgttggaactcctggaagaatattggcactg
gcaagagataaggacctttctttgaagaatgtgaggcattttattcttgatgaatgtgac
aagatgcttgaatcacttgacatgaggagagatgtgcaggagattttcaagatgactcct
catgataagcaagttatgatgttctctgcaacactcagcaaagaaatccgcccagtttgc
aagagatttatgcaagaaccaatggaaatttatgttgacgacgaggcaaagttaaccctt
catggtcttgttcagcactacatcaaattgagcgagtcggagaaaaaccgcaagttgaat
gacctccttgatgcattggactttaatcaagttgttatctttgtcaaaagtgtcaacaga
gcagctgagcttaacaagctacttaaggagtgtaatttccccgcaatatgcatccattct
ggcatgtcccaagaggaaaggttgacacgctacaagaattttaaggaggggcagtcgagg
attcttgtggccacagacttggttggtagggggattgatattgaacgtgttaacattgtc
attaattatgacatgccagattctgcagacacttatctccacagggttggtagagctggt
cggttcggaaccaaagggcttgcaattacattcgtttcatctgcttccgattcggaggtt
ctcaataatgttcaaatgaggtttgaggtggatataaaggaacttcctgagcagattgat
acctctacatacatgccatcataa
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