Juglans regia (English walnut): 108986776
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Entry
108986776 CDS
T05245
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108986776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108986776
Spliceosome [BR:
jre03041
]
Complex C
Other components
Step II factors
108986776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
108986776
NCBI-ProteinID:
XP_018815073
UniProt:
A0A833U2R6
A0A2I4E6P9
LinkDB
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Position
16:17930514..17936258
Genome browser
AA seq
591 aa
AA seq
DB search
MDLLRTYTDQNDVELNDPEDQNQNPNPNTPSPDASPPRLLPGKSAAPKVDDTMLALTVAQ
AHQALSRPIDPVQHAVAFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIEP
FVFDEQYNTFHKYGYAADPSASAGNNYVGDLDALRENDSISVYSIPQHEQKKRKIEKKKE
MEEDKDPEEVVDKVELDNPASDTWLMKNRKSPWAGKKEGQQTELTEEQKKYAEEYAKKKG
EERERGGEKGETVPDKSTFHGKEEKDYQGRSWIAPPKDAKATNEHCYIPKRLVHTWSGHT
KGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIWFCNDGTKFL
TAGYDKNIKYWDTETGQVISSFSTGKIPYVVRLNPDEDKQNILLAGMSDKKIVQWDMNTA
QITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS
LHPSTNYLAAQSLDNQILIYGTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG
EGKCWFWDWKTCRVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatctactccgcacctacactgaccaaaacgacgtcgaactcaacgacccagaggac
caaaaccaaaaccctaatcccaacacgccgtcaccggacgcctccccgcctcgcctcctc
cccggaaagtccgccgctcccaaggttgacgacaccatgctagccctgacggtggcgcag
gcccaccaagccctgtcccggcccatcgacccggtccagcacgccgtcgccttcaacccc
acctacgaccagctctgggcccccatctacggccccgcccatccctacgccaaggacggc
atcgcccagggcatgcgcaaccacaagctcggtttcgtcgaggatgcatccatcgaaccc
ttcgtcttcgacgagcaatacaacactttccacaagtacggctacgctgccgacccctcc
gcctctgccggcaacaactatgtcggagatctagacgctttgcgcgaaaacgactccatc
tccgtctacagcataccgcagcacgagcagaagaagaggaagatagagaagaagaaggaa
atggaggaggataaggaccccgaagaagtcgtcgacaaggtggagcttgataatcctgcg
agcgacacctggttgatgaagaaccggaagagtccttgggcaggcaagaaggaaggtcaa
caaaccgaattgacggaggagcagaagaagtacgctgaggaatacgcgaagaagaagggc
gaagaaagagagagaggcggcgagaagggcgagactgttccagataagagcacgttccat
ggtaaggaggagaaggattatcagggtaggtcttggatcgcgccgcccaaggacgccaag
gccacgaacgaacattgttatatacccaagaggttggtgcacacttggagcggccacacc
aagggcgtgtccgcaatccggttcttcccgaaacacgggcatttgattttgtcagcgggg
atggacacgaaggtgaagatttgggatgtgttcaattctggcaaatgtatgaggacctac
atgggccactccaaggcggttcgggacatttggttttgcaacgacgggaccaagtttctg
actgccgggtatgataagaatatcaagtactgggatacagagaccgggcaagtgatatca
agtttcagtaccgggaagattccgtacgttgtcaggcttaatccggacgaagataaacag
aacatcttgctggcggggatgagcgataagaagattgttcagtgggatatgaacacggca
cagattacgcaagagtatgatcagcatttaggagccgtgaataccattacttttgtcgat
aataacaggaggtttgttacttcaagcgatgacaagtcgcttcgtgtatgggaattcggg
attcctgtggtcataaagtatattagtgagccgcatatgcactctatgccatcaatttcg
ctccaccctagtacgaattatcttgccgcgcagagtttggataatcagattcttatatat
ggcacgagagagaggtttcagctcaataagaagaagaggtttgctgggcacattgtggcc
gggtatgcttgccaggtcaatttctctcctgatggacggttcgttatgtctggagatggt
gagggtaaatgctggttttgggattggaagacatgcagagtcttcagaactcttaaatgc
catgagggagtatgcattgggtgtgagtggcatcccttagaacaaagcaaggttgcaaca
tgcggctgggatggattgattaagtactgggactag
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