Juglans regia (English walnut): 108988327
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Entry
108988327 CDS
T05245
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03022
Basal transcription factors
jre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108988327
09124 Replication and repair
03420 Nucleotide excision repair
108988327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108988327
03400 DNA repair and recombination proteins [BR:
jre03400
]
108988327
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108988327
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108988327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Glyco_transf_10
Motif
Other DBs
NCBI-GeneID:
108988327
NCBI-ProteinID:
XP_018817108
UniProt:
A0A2I4ECI6
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Position
13:34856771..34865511
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AA seq
290 aa
AA seq
DB search
MASAPSKLYADDVSLLVVLLDTNPFFWSSFSLPFSKFLSHVLSFLNSILLLNQFNQVVVI
ATGCNSCDYIYDSSSATNTDAESGRMPALCSDLLRKLDEFVTRDQHLGEKDSLGPPTSSL
LSGSLSMALCYIQKVFRSGPLHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSMVPIDSC
FMGSNNSAFLQQASYITGGVYQKPQQLDGLFQYLSTVFATDLHSRTFLRLPKSVGVDFRA
SCFCHKRTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQPQSDVPSASNVK
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagctccttctaagctatatgcagatgacgtaagtctcctggtggtactctta
gatacaaaccctttcttctggagctcattctctctcccattctccaagtttctctctcac
gtactttcgtttcttaactcaatcttactcctcaaccaattcaaccaagtcgtggtcatt
gctaccgggtgtaattcctgcgactatatctatgactcttcttcggcgacgaacaccgat
gcagaaagcggaagaatgcccgctctttgctctgacttgttgcggaaattggatgagttc
gtcaccagagatcagcacttgggggagaaagactctctaggaccgcctacgtcttcgctc
ctatcgggctccttgtccatggctctttgttatatacagaaggtttttcgttcgggacca
ctgcatccacagcctcgaattttatgcttgcagggatccacagatggacctgagcaatat
gtggcgatcatgaatgcaatattctcagctcagcgttcaatggttcctatagattcttgt
tttatgggctctaacaattctgccttcctgcagcaggcttcttacataactggtggtgtg
tatcagaagccccaacaattggatgggctctttcagtatctctcgacggtttttgcaact
gatttgcattctcgtactttcttacggcttcccaagtctgttggtgttgacttccgtgcc
tcgtgcttttgtcataaaagaacaatcgacatgggctacatatgttctgtatgcttgtcc
attttttgtaagcatcacaagaaatgttcgacctgtgggtcagtatttgggcagccccag
tcagatgttccctcggcatccaatgtcaagtga
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