Juglans regia (English walnut): 108989020
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Entry
108989020 CDS
T05245
Name
(RefSeq) flowering time control protein FY-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108989020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108989020
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108989020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_SPT8
eIF2A
WD40_MABP1-WDR62_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_DCAF12
Tricorn_2nd
WD40_like
Beta-prop_RIG_1st
WD_LRWD1
WDR54
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
108989020
NCBI-ProteinID:
XP_018818009
UniProt:
A0A2I4EF34
A0A833XQ41
LinkDB
All DBs
Position
5:986994..997285
Genome browser
AA seq
725 aa
AA seq
DB search
MMYGGDPQQQYHQQQGGDFNRGPPPPPMMRQPSASSSTLAPDYHHPSAQAPPPYDAHGDS
FAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTTLQPTPAAAIDMLPTIAYSDNP
STSFTAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQ
AIRSMIWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS
DDTTVKIWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCS
FHGHKNVVLSVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE
EYFVSGSFDGSIFHWLVGHETPQVEIPNAHDNAVWDLAWHPIGYLLCSGSNDHTTKFWCK
NRPGDTARDKFSMGQNQGYGEQNPVFGGRMTGNFPAPEGPTTPGSFAPGLTRNEGTIPGV
GVAMPLSIQSLDASAQGEQKQPLPVSMPVGAPPLPPGPHPSLLAANQQQSYQQQPQQIPP
HHHHHHQQHQTLPQQMSPLPMPPPNMSQLQPPSHLPLLPHPHLSRPPPQMVPLGMPSSIP
SSMPGSLPMPSSGPGLHQLPGPVGMQGTMNQIPPLRQGHFMGMNPMHSGSLPSSGPPSQV
GSFQNGLTNMQAPSNAGGPQMYPRGGIFNRPQAGQMSMMPGYNPYQSGSQSSMPAGPPPH
AQTPP
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtggtgatcctcaacagcagtatcatcagcagcaaggcggggactttaac
cggggcccacccccgccgcctatgatgaggcagccctctgcgtcttccagtactcttgcc
ccagattatcaccacccctccgcccaagcacctcctccttacgatgctcacggtgatagt
tttgctgcaaagaggatgagaaagcttacccaaaggagggcagttgattatactagcact
gttgtgcgttatatgcagattcgtatgtggcagcgagattcaagggataggacaacattg
caacctaccccagcagctgcgattgatatgttgccaacaattgcctattcagataatcca
tctacaagctttactgcaaaatttgtgcatacctcgttgaataaaaaccgttgttcaatt
aaccgggttttgtggactcctacagggaggcgattaatcacaggctctcaaagtggggaa
ttcactctttggaatggacagtcatttaatttcgaaatgattcttcaggcccatgatcaa
gcaatcagatctatgatatggagtcacaatgacaactggatggtctctggtgatgatggt
ggctcgataaagtactggcagaacaacatgaataatgtcaaggccaataagtctgctcat
aaagaatcggtcagggacttaagcttctgtaggacagacctgaagttctgctcctgctca
gatgatacaactgttaaaatttgggactttgcgcgatgccaagaagagcgttcattgtct
ggccatggttgggatgtgaagagtgttgactggcaccctacaaaatctcttctagtttca
ggtgggaaagacaaccttgtgaaactttgggatgccaaaacaggaagagagctttgttcg
ttccatggccacaaaaacgtggtgctctccgtgaaatggaaccaaaatggtaactgggtg
ctaactgcttcaaaggatcaaatcatcaagctttatgacattagggctatgaaagagctt
gagtcttttcgtggacatcggaaagatgtgactgcgctggcttggcacccattccatgaa
gaatactttgtcagtgggagttttgatgggtccattttccattggcttgtggggcatgaa
acgcctcaggtagaaattcctaatgcgcatgataatgctgtgtgggaccttgcatggcat
cctattggatatcttctttgcagtggtagcaatgatcacacgacaaagttctggtgcaaa
aataggccaggggatactgcccgtgataaatttagcatgggtcagaaccaaggttatggt
gagcaaaaccctgtttttggtggtcgcatgactggtaatttcccagcacctgaagggcca
acaactccaggatcatttgctcctgggctgactcgaaatgaaggaactattcctggtgtt
ggagttgcaatgccattatccattcaatctcttgatgcatcagctcagggagagcaaaag
cagcctcttcctgtttcaatgcctgtaggggctcctcctctccctcctggtccacatccc
tcccttcttgctgccaaccagcagcaatcatatcaacaacagccgcagcagatcccacca
caccaccaccaccaccaccaacaacatcagacactcccacagcaaatgtcacctttgcct
atgccacctccaaacatgtcacagctacaacctccatctcatttacctttacttccacat
ccccatttatctcgccctccaccccaaatggtcccacttggtatgccttcatcaattcca
tcttcaatgccaggatcgttgccaatgccatcatcagggcctggcttacatcaattgcct
ggtccagtgggaatgcaaggtacaatgaatcagattcctccattgcggcaaggccatttt
atgggtatgaaccccatgcactcaggatctttaccttcgagtggaccaccttcacaggtt
ggaagttttcagaatggcttgacaaatatgcaggccccatcaaatgcaggtgggccccag
atgtatcctcggggtgggatatttaaccggccacaagctggacaaatgtcaatgatgcca
ggttataatccctaccagtcgggcagtcaatctagcatgcctgctggtccaccaccgcat
gcccaaacacctccatag
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