Juglans regia (English walnut): 108989185
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Entry
108989185 CDS
T05245
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108989185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108989185
03400 DNA repair and recombination proteins [BR:
jre03400
]
108989185
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108989185
Messenger RNA biogenesis [BR:
jre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
108989185
DNA repair and recombination proteins [BR:
jre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
108989185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
HAD_2
Motif
Other DBs
NCBI-GeneID:
108989185
NCBI-ProteinID:
XP_035540896
UniProt:
A0A6P9E0K8
LinkDB
All DBs
Position
14:5346127..5369398
Genome browser
AA seq
915 aa
AA seq
DB search
MESVLKKYFGYSEFREYQKEVIEEILQKRDCLAVMATGSGKSLCYQVPPLVVKKTGIVIS
PLISLMQDQVMALKQRGIRAEYLGSAQTNSTVQSRAESGQFDVLFMTPEKACLIPTSFWS
KLLKVGISLFAVDEAHCISEWGHDFRVEYKQLGKLRDVLFNVPFVGLTATATEKVRIDII
SSLKLKDPHVAIGSFDRRNLFYGVKSFNRGQLFINELVGEISKFVALSGSTIVYCTTIKD
VEQIFTSLKEEGIKVGIYHGQMDKKAREESHRLFIQDELNVMVATIAFGMGIDKPNIRQV
MHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCAESKTENQRRAVMESL
MAAQQYCLVTTCRRKFLLNHFGENSSTDRCGNCDNCIVLKKERDMSREAFLIMACIQSCR
GKWGLNMPIDVLRGSRSKKILDAQFDKLPLHGLGKGYSSNWWKALACQLISHGYLMQTVH
DLYVTVSVSSKGEKFLSSARPDYQPPLVLPLSSEMVDDDKHKSKSGEAEEFKSLATFDCE
GFSEVEAQLYQLLLEERLKLARGIGTAPYAICGDQTIKNIALTRPSTKARLANIDGVNQH
LLVTHGDHFLQIIRNLSQGLNLSLDGEASLRTAMTRKVYSLPNQQMNNLTPAKFEAWKMW
HEDGLSIQKIANFPGRSAPIKEQTVSQYLLDAAQEDLPIDWTRYCDEVGLTREIFSAILG
AITKVGSTERLKPIKDELPEDVSYAQIRTSLVMQNRGISSEVITASCQNTWNADQLPNTV
PECSLIPTSICSMEGPCEAEASLKNSVAHCCFEKNEETAPVAITGGRGLKLSLVHDEDPL
LKKRQKVSTVEEGSSISLKATESSIIEWLKNYDGVTLSDILEHFDRSEEESVVDLLSCLE
GNFFIYKKNDVYRVM
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgttctcaagaaatattttgggtattctgagttccgggagtatcagaaggag
gtcattgaggaaattctgcagaaaagggactgcttggcggtgatggccaccggtagcgga
aagtccttatgctatcaggtaccgccgttggtcgttaaaaaaactggtattgtgatcagt
cctctcatatcgttgatgcaagatcaggtaatggctttgaaacaacggggtatcagagct
gagtatctcggaagtgcacagacgaattccacagtccagtccagagctgagagtggtcaa
tttgatgttttgttcatgacccctgagaaggcatgcttgattccaaccagtttctggtca
aaattgctgaaggtgggaatttctttgtttgctgttgatgaagcacactgcatatcagag
tggggccatgatttcagggtggaatacaagcagttaggcaagttacgtgatgttctcttt
aatgttccatttgttggactgactgcaactgctactgaaaaggttcggattgacatcatt
agttccctgaagcttaaagatccccatgttgccattggctcatttgatcgaagaaatctt
ttctacggtgtcaagtcttttaatcgcggccaattatttatcaatgagcttgtgggagaa
atttctaagtttgtagctctctctggttcaactatcgtttactgcacaacaattaaagat
gttgaacagatattcacatcacttaaggaggaaggaattaaggttggaatttatcatggt
caaatggataagaaagcgcgtgaggaatcccacagattatttatacaagatgaactgaat
gtcatggttgcaactattgcttttggcatgggtattgataagccaaacataagacaagtg
atgcactatggttgccccaagagtctagaatcctattaccaggaaagcgggcgatgtggt
agagatggtatagcttctgtctgctggctttattatacaagaagtgactttgcaaaggct
gatttctactgtgcagaatccaaaacagaaaatcaaagaagagctgttatggagtcattg
atggctgcacaacagtattgcttggttacaacttgcagaaggaagtttctgctcaatcac
tttggagaaaattcttcaactgatagatgtggaaattgtgataactgcattgtcttaaag
aaggaacgcgatatgtctagagaagcatttcttataatggcttgcattcaatcctgtagg
ggtaaatggggcctgaatatgcccatagatgttcttcgtggttctcgatcaaaaaaaatt
cttgatgctcagttcgacaagcttccacttcatggacttgggaaaggttactcatcgaat
tggtggaaagcactagcttgccaattaatttctcatggttacttgatgcagactgtacat
gacttatatgtaactgtaagtgtcagctcaaaaggagagaaatttcttagttctgcgaga
cctgattatcaaccacccctagttttgcccttgagcagtgaaatggttgatgatgacaaa
cataaaagcaagtccggtgaagctgaagagttcaaaagtttggctacttttgattgtgag
ggattttcagaggttgaggcacaactctatcaattgcttttagaagagagactaaagctc
gcaaggggcattggaactgcaccatatgctatatgtggtgatcaaacaattaaaaatatt
gcactgacaaggccatctaccaaagcaaggcttgcgaacattgatggtgtcaaccagcac
ctgctagtgacacatggagatcattttcttcagattattagaaatctatcacaaggacta
aacctttcattggatggggaagcaagcttacggactgctatgacaagaaaagtgtattcg
ttacccaatcaacaaatgaacaacttaactccagcaaagtttgaagcttggaaaatgtgg
catgaagatggtctctccattcagaaaattgctaacttccctggtagatcggctcccatc
aaagaacaaactgtttcacaatacctcctagatgctgcccaagaagatcttccaattgat
tggaccagatactgtgatgaagttggactgacacgcgaaatattctcagccattctgggt
gccattactaaggttggttctacagagaggttgaagcccataaaagatgaactacctgaa
gacgtaagttatgcacagatcaggactagtctggtaatgcaaaaccgtgggatctcttca
gaagtgataacggccagttgccagaatacatggaatgctgatcaacttccgaatacggtg
ccagaatgctcgctgattcccaccagtatatgcagcatggaaggaccctgtgaagctgaa
gcgtcactcaagaattcagttgctcattgctgctttgaaaaaaatgaagaaacagctcct
gttgccatcaccggtggccgaggattaaagctatccctagtgcatgatgaggatccactc
ttaaaaaaacgccaaaaggtcagcacagttgaggaagggagttccatctcattgaaggca
acggagagttccataatagagtggcttaagaactatgatggagttacactgtctgatata
ctggagcacttcgacagatccgaagaagaatctgtggtggatctgctgagttgccttgaa
ggtaacttttttatatataaaaagaatgacgtttacagggttatgtaa
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