Juglans regia (English walnut): 108989324
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Entry
108989324 CDS
T05245
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108989324
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
jre02000
]
108989324
Transporters [BR:
jre02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108989324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
RsgA_GTPase
AAA_22
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108989324
NCBI-ProteinID:
XP_018818424
UniProt:
A0A2I4EG95
A0A834D2Y5
LinkDB
All DBs
Position
3:3490721..3538747
Genome browser
AA seq
1894 aa
AA seq
DB search
MGTRRRQLKAMLRKNWLLKTRHPFATLAEILLPTVVMLLLIAIRTRVDTQIHPARPYIQK
EMFVEVGKGMSPSFQQILELLLAKGEYLAFAPDTEETETMINLMSMKFPLLKQVTKVYKD
ELDLETYVRSNLYGTFNQVKNCSNPKIKGAVVFHDQGPLIFDYSIRLNHTWAFSGFPDVN
TIMDTNGPYLNDLALGVSTVPTMQYSFSGFLTIQQVMDAFIIFAAQQTETNSSQNIELTS
GQSSGTASSLMFPLMQFSPSKIRIAPFPTREYTADEFQSIIKNVMGVLYLLGFLYPTSRL
ISCYVFEKEQKIKEGLHMMGLKDGIYHLSWFIASALQFAISSGIITACTMNTLFKYSDKS
VVFVYFFSFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAYFPYYTVNDQAVPITLKVL
ASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVNFLVCLLMMLLDTLLYCVIGLY
LDKVLPRENGVRYPWNFIFQGSFWKKKSIIEHHTSSLKVTINDNISKKKVGFSRKDALEP
SVEAISLDMRQQELDGRCIQIRNLHKVYATKKGNCCAVNSLKLTLYENQILALLGHNGAG
KSTTISMLVGLLPPSSGDATVFGKNIITDMDEIRKGLGVCPQIDILFPELTVREHLEIFA
VLKGVKEEFLERVVSDMIDEVGLADKTNTAVKALSGGMKRKLSLGIALIGDSKVIILDEP
TSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLRCCGSSLFLK
HQYGVGYTLTLAKSAPTASVASDIVYRHVPSATCVSEVGTEISFKLPLASSSSFENMFRE
IESCTRRTFSNSETSGCEGKDYLGIESYGISVTTLEEVFLRVAGGDCEEAECIERNEDFL
LPDAVVSQALHDCAPKNILDSKLLGNYKYILGVISTIVGRACGLIFATVLSFINFLSMQC
CSCCFISRSTFWQHSRALFIKRMISARRDHKTIVFQLVIPVVFLFFGLLFLKLKPHPDQL
SLTFTTSQFNPLLRGGGGGGPIPFDLSWPIAKEIAGYIDGGWIQSFKPSAYKFPDSEKAL
ADAIEAAGPTLGPVLLSMSEFLMSSFNESYQSRYGAIVMDDQNEDGSLGYSVLHNSSCQH
AAPTFINLMNAAILRLATHKNNMTIQTRNHPLPMTESQRLQRHDLDAFSAAVIVNIAFSF
IPASFAVAVVKEREVKAKHQQLISGVSVLSYWASTFIWDFVSFLFPSSFAIILFYIFGLD
QFIGRGYVLSTVIMFLEYGLSIASLTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFI
MGLIQTTASANSFLKNFFRLSPGFCFADGLASLALLRQGMKDKSSDGVFDWNVTGASICY
LGLESISFFFLTLGLELLPSHKLAPFTIKEWWSRIKGFHRGTSSSYLEPLLKPSTEAVAL
DLDEDIDVKSERNRVLSGSIDNAIIYLHNLRKVYPGGMHRNAKVAVQSLTFSVQAGECFG
FLGTNGAGKTTTLSMLCGEESPTDGTAYIFGRDICSNPKAARRHIGYCPQFDALLEFLTA
REHLELYARIKGVPEYRIDDVVMEKLEEFDLLKHAEKPSFSLSGGNKRKLSVAIAMIGDP
PIVILDEPSTGMDPLAKRFMWEVISHLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGR
LRCIGSPQHLKTRFGNHLELEIKPTEVSSVDLESLCRIIQERLFDIPSHPRSLLDDLEVC
IGGIDSIASEKTSAAEISLSKEMIITIGRCLGNEERTNALVSSTLVSDGIFTEQLSEQLV
RHGGIPLPIFSEWWLAKEKFSMIDSFVLASFPDATFQGCNGLSVKYQLPYGEGGLSLADV
FGHLEQNRNRLGIAEYSISQSTLETIFNHFAANS
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccaggcggagacagttgaaggccatgcttcgcaagaactggctcctcaaaact
cgtcaccctttcgctacccttgccgagatattacttcctacagttgtgatgttgttgtta
atagcaatacggacgcgagttgatacacaaattcacccagcacggccgtatatacagaaa
gaaatgtttgtggaagtgggcaaaggtatgtccccaagtttccaacaaattttagaattg
ttgctggcaaaaggagagtatttggcctttgcaccagatacagaagagacagagacaatg
attaacttaatgtcaatgaagtttcccttgttgaagcaagtcactaaagtttacaaagat
gagctagacctggaaacctatgtgcgctcaaatctctatggtaccttcaatcaagtcaag
aattgttcaaatccgaagatcaaaggtgcagtagtgtttcatgatcaaggtcctttaata
tttgattacagcatccgcctcaaccacacttgggctttctcgggattccctgatgtaaac
accataatggacacaaatggtccttatctcaatgacttggcactgggtgttagtactgta
ccaacaatgcagtatagcttcagtggatttttgactatccaacaagtaatggatgcattc
ataatatttgctgctcagcaaactgaaactaactcctctcaaaatatagaacttacatca
ggacaatcctctggcacagcctcctctctcatgtttccgttgatgcaatttagcccttca
aagatacgaatagctccctttccaactcgcgaatacaccgctgatgagttccagtccatc
attaagaatgtcatgggcgtattgtatcttttgggatttctctacccaacctctcgcctg
atcagctgttatgtgttcgagaaggaacagaaaataaaagaaggtcttcacatgatgggc
ttaaaagatgggatttaccatctttcttggtttattgcatctgctttacagtttgcaatt
tcatctgggatcattacagcctgcaccatgaacacccttttcaagtacagcgataaatca
gtggtgtttgtgtacttcttttcatttggacttagtgcgatcatgctgtcatttttgata
tctacattcttcacacgagccaaaacagctgttgcagttgggactctatcttttctaggt
gcctatttcccttattacactgtcaacgaccaggctgtccctattactttaaaggtcctt
gcttctttgctttctcctacggcctttgctctagggtcgattaactttgctgactatgag
cgtgcgcatgttggacttcgttggagcaacatatggcgggcatcatctggagtgaatttt
ttggtctgtctcctgatgatgttgcttgacacgctgctgtactgtgtgattggtctttac
ctggataaggtccttccccgagagaatggtgtgcgttatccatggaacttcatattccaa
gggtccttctggaaaaagaaaagtatcattgaacatcacacttccagtttaaaagttaca
attaacgacaacatttccaagaaaaaggtaggtttttctaggaaggatgctcttgaacct
tctgtggaagcaataagcttggacatgaggcaacaagagcttgatggcagatgcatccaa
attaggaacctgcataaggtgtatgctacaaagaaggggaattgttgtgctgttaactca
ttgaagttgaccttgtatgaaaatcaaattcttgctcttctagggcacaatggagctggt
aaaagcacaacgatttcgatgcttgttggccttctcccccccagttcaggggatgctacg
gtttttgggaagaatatcataacagacatggatgagatacggaagggactaggtgtttgc
ccccaaattgatattcttttcccagaattgaccgtgagagagcatttggaaatttttgct
gtattgaagggtgtgaaggaagaatttttggagagagttgtttcggatatgattgatgaa
gtgggtttggctgataaaaccaacactgcagttaaggctctttctggtggcatgaagagg
aaattgtctcttggaatcgcactgattggagatagcaaggtcattattcttgatgaacct
actagcggaatggatccatactcaatgcgcttgacatggcagttgataaaaaaaataaag
aagggcaggataatattactgacaacacactcgatggacgaagctgatgaactaggagat
cggatagctatcatggctaatggttctttgagatgctgtggaagctcccttttcttgaag
caccagtatggggttggttatactctaacactagcaaagtctgcacctactgcctctgta
gcctctgatattgtgtaccgtcatgttccatcagcaacctgtgtgagtgaggttggaact
gagatttccttcaagcttcctttagcatcttcctcttcctttgaaaatatgtttagggaa
attgagagttgcacgaggagaacattttctaactctgaaacaagtgggtgtgagggcaaa
gactatctcggcatcgaaagttatggtatttctgtaacaactttggaggaggtattcctg
agagttgctggaggtgattgtgaagaagctgaatgcattgagcgcaatgaggactttctt
ttacctgatgctgtggtttctcaagctttgcatgattgtgctcccaaaaacattttggac
tccaaacttcttggaaattacaaatatattcttggggtcatatcaaccatagtggggaga
gcttgtggcttaatatttgctacagttttgagtttcataaactttttaagtatgcagtgc
tgtagctgttgtttcatttcaaggtcaacattttggcaacattccagagcattattcata
aaaaggatgatatctgctcggagagaccacaaaacaattgttttccaacttgtaattcct
gtggtctttttgttttttggacttctttttctcaagctcaagccacatcctgatcagctg
tctctgacttttacaacttcacaattcaatcctctcttacgtggtggtggtggtggtggt
ccaattccctttgatctatcctggcctattgcaaaggagattgcagggtatattgatggc
gggtggattcaaagcttcaaaccgagtgcatataaattcccggattcagaaaaagcatta
gccgatgcaattgaggctgcagggcctactctgggtccagttctactttcaatgagtgaa
tttttgatgtctagctttaatgaatcctaccagtcaaggtatggggcaattgtgatggat
gatcagaatgaggatggaagtctaggatactctgtactacacaacagttcttgtcagcat
gctgctccaacctttatcaatctgatgaatgctgcgatccttaggcttgctactcataaa
aataatatgactattcaaacgcggaaccatcctctgccaatgacagaaagccagcgcctg
caacgtcatgatcttgatgcgttttctgctgcagttattgttaacattgccttctctttc
attcctgcctcatttgctgttgctgttgtcaaggagcgtgaagtaaaagccaaacaccaa
caactaattagtggtgtttccgtactttcgtattgggcttctacatttatatgggacttt
gtcagcttcttatttccttcatcttttgcaataattcttttttacatctttgggttggat
caatttattggaaggggctatgtcttgtcaacagtcatcatgtttttggagtatggatta
tcaattgcatcactgacgtattgccttacgtttttcttttctgaccataccatggcacag
aatgtggttctcttggtccactttttcacggggctcatccttatggttatctcgttcatt
atggggcttatacagacaacagcaagcgccaattcttttcttaagaatttcttcagatta
tctccagggttttgctttgctgatgggcttgcttcattggctcttctacggcaagggatg
aaagataaatcaagtgatggggtttttgattggaatgttactggtgcttccatttgttat
cttggtcttgagagcattagtttcttcttcttaacacttgggcttgaactcttgccttcc
cacaaattggctcctttcacaatcaaggaatggtggagccgtattaaaggtttccatcgt
ggcacttcttctagctatttggagcctcttctgaaaccttccacagaagctgttgctctt
gatcttgatgaagacattgatgtgaaatcagaaagaaatagggtgctttcggggtcaatt
gataatgccatcatttacttgcataatcttcggaaggtgtatcctggaggaatgcatcgc
aacgcaaaagttgcagttcagtcattgactttctcagttcaagctggagaatgttttgga
tttttaggaacaaatggagctgggaaaaccacaactctttcgatgctctgtggagaagaa
tccccgactgatggaactgcttatatttttggcagagatatatgttccaatcccaaggct
gctcgtcgacatattgggtattgcccacaatttgatgctctattggaatttttaactgcc
cgagagcatcttgagctttatgcaagaataaagggagttccagaatacaggatagatgat
gttgtaatggaaaagttagaggagtttgatttgttgaagcatgccgaaaaaccatcattc
tcccttagtggtggaaacaagcgcaaattatctgttgcaattgcaatgattggtgatcct
cctatagtcattctagatgagccatccacaggcatggatcctcttgccaaacggtttatg
tgggaagtgatatcccatttatctaccagacaaggaaagacagcagtaattctcacaaca
cacagcatgaatgaagctcaagctctgtgcaccaggattggaataatggttggaggccga
ctaagatgcattgggagtcctcagcatctgaaaacacgatttggaaatcaccttgagcta
gagattaaacctacagaggtcagttctgtggacttggaaagcctttgccgaattattcaa
gaaaggctttttgacattccttctcacccaagaagtttacttgatgaccttgaagtttgc
attgggggcattgactccattgcatcagaaaaaacatcagctgcggagataagcttgtcg
aaggaaatgattatcacaattggacgttgtcttggtaatgaagaaagaacaaatgcactt
gtatcttcaacacttgtttctgatgggatttttactgaacagttatctgagcagttggtt
cgacatggtggcatacctttgccaatattttctgagtggtggttagccaaagaaaagttc
tctatgattgattcatttgtcctcgcttcgtttcccgatgcaacgttccaaggatgcaat
ggattgagtgttaaatatcagttgccatatggtgaaggcggcctctcacttgcggacgtt
tttggacacctggaacaaaacagaaatcgcctgggtatcgctgaatacagtattagccag
tctactctcgagaccatatttaatcattttgctgcaaactcataa
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integrated database retrieval system
