Juglans regia (English walnut): 108990627
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Entry
108990627 CDS
T05245
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03022
Basal transcription factors
jre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108990627
09124 Replication and repair
03420 Nucleotide excision repair
108990627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108990627
03400 DNA repair and recombination proteins [BR:
jre03400
]
108990627
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108990627
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108990627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
108990627
NCBI-ProteinID:
XP_018820182
UniProt:
A0A834D1S7
A0A2I4ELB7
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Position
3:complement(5320171..5327693)
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AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVSSLPAMKLDKLYENAFICEAILRSLPPLAKKYVLQTLYIDVPITA
KSMEEWVLPDGSSKHRVAIDRLIQLRIFTETVDRRRETTYRIHPTFQTNLQKLVTLGEVL
PREPMSSDITVRLPSLEDLEVYALAQWECFLLQLINSAQAERPLNISPSMMKVFQRGLLS
QREKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGK
AYNSNTLTEIQRSLIKDLTDLGLVKLQQGRKESWFIPTKLATNLSVSLTDSSARKQGFVV
VETNFRLYAYSSSKLHSEVLRLFSRIEYQLPNLIVGAITKESLYNAFENGIAAEQIITFL
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMSPAHYYDEFPSRDVFEAACDYAREW
NGLLWEDSKSMRIVVKAEIHSHMREHLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagataatcgcgaagaatttcatggacatggtgtcctccttgcccgcc
atgaagctggataaactatacgagaatgcgttcatctgcgaagccattctcaggtcactg
ccacctcttgccaagaagtatgttttgcaaacgttgtacattgatgttccaataacagcc
aagtcaatggaggagtgggtgcttccagatgggtcctcgaagcatagagttgcaattgat
agattgattcaattaaggatattcactgagactgttgacaggagaagggaaacaacttac
agaattcatccaacatttcagacaaacctccaaaagcttgtaacacttggtgaggttttg
ccaagggaaccgatgtcttctgacataacagtgaggctcccaagcttggaggatcttgag
gtttatgcccttgcacaatgggagtgttttttgctccaacttataaactcggctcaagct
gaaaggccattaaatataagcccttctatgatgaaagttttccagcgaggccttttgagt
caaagggagaaggaagctccacgattaactgaaagtggttttcaattcttgctgatggac
acgaacgcacaactttggtacatcatcagagagtacatctctaattctgaggagcgaggc
gtggatccagctgatttgatttcattcttactagagcttagttttcatgtcactggcaag
gcatataatagtaacacgttgaccgagattcagaggagtttgattaaggacctcacagat
ttgggattggtcaaactccagcagggcaggaaagagagttggtttatacctactaaatta
gctaccaatctttcagtaagcttgacagattcatcggcacggaaacaagggtttgtggtc
gtggaaacaaattttagattgtatgcgtactcctcttcaaagttgcactctgaagttcta
cgtcttttctcaaggatagagtatcaacttcctaatcttatagtcggggcaatcacaaaa
gaaagtttatataatgcctttgaaaatggtattgcagcagagcagataattacctttctt
cagcagaatgcccatcctcgtgtagcagagagaataccatctgtacctgaaaatgtcacg
gatcagattaggctgtgggaatcagatcttaatagagttgagatgagtcctgcacattac
tacgatgaatttccttctagggatgtctttgaggctgcttgtgattacgcacgagagtgg
aatgggttgctatgggaggattcaaaaagcatgcgtatagtagtcaaagcagaaatacac
agccatatgcgtgaacatttacgccgtcaaaagtag
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