Juglans regia (English walnut): 108990711
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Entry
108990711 CDS
T05245
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108990711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108990711
03041 Spliceosome [BR:
jre03041
]
108990711
03009 Ribosome biogenesis [BR:
jre03009
]
108990711
03016 Transfer RNA biogenesis [BR:
jre03016
]
108990711
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108990711
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108990711
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108990711
Complex C
U4/U6.U5 tri-SnRNP related factors
108990711
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
Helicases
108990711
Transfer RNA biogenesis [BR:
jre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108990711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Death_3
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108990711
NCBI-ProteinID:
XP_018820296
UniProt:
A0A2I4ELM4
A0A833XQ30
LinkDB
All DBs
Position
6:34669907..34682382
Genome browser
AA seq
1034 aa
AA seq
DB search
MEESPSLGKRKEPEPEPEESKVAEIHNQGSAPKRQREPEDSEVTETINPESVVNRQREPK
ESEVTRTPNQASLQNKSNLMRTCVHEVAVPSGYTSTKDESSHGTLSNPIYNGKTAKTYPF
TLDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFREKQRVIYTSPLKALSNQK
YRELSQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK
DRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFRPTPLQH
YVFPMGGNGLYLVVDENEQFREDNFVKLQDTFSKQKLDVNKGSNGKAGGRIARGGNASGG
SDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNNQEEKDTVEEVFRNAILCL
NEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEGLVKALFATETFAMGLNM
PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIMVDEQMEMNSLKDM
VLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNSFHQFQHEKALPDIGKKVSKLE
QEAVVLDASGEAEVAEYHKLKLDIAQLEKKLMAEITRPERVLYHLRPGRLVKIREGGTDW
GWGVVVNVMKKPSAGVGALSSRGVGYIVDTLLHCSPGSSENGSRPKPCPPHPGEKGEMHV
VPVQLPLISALSKLMVSIPSDLRPLEARQSILLAIQELKTRFPQGLPKLNPVEDMGIKDP
EIVELVNQIEELEQKLYAHPLQKSQDVQQMRSFLRKAEVNHEIQQLKSKMRDSQLQKFRD
ELKNRSRVLKRLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIAALA
SCFIPGDKSSEQIQLRTELARPLQQLQESARRIAEIQYECKLEINVEEYVESTVRPYLMD
VIYCWSKGANFAEVIEMTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVDLENKFAAASE
SLRRGIMFANSLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccatccctagggaaacgaaaagaacctgaacctgaacctgaagaatcg
aaggttgcagaaatccataatcaaggatctgctccgaaacgacagagagaacctgaagat
tcagaggtcactgaaaccataaatcctgagtctgttgtgaatcgacaaagagaacccaaa
gaatcagaggttacaaggacacctaatcaagcttctctccaaaataaaagcaatttgatg
cgcacatgtgtgcacgaggttgcagttccaagtggatacacttcaaccaaggatgaatcg
agtcatggaaccctctcaaatcccatatataatggcaagacagcgaaaacatatcctttt
acgctggacccatttcagcaggtatctgtggcatgcttagaacggaatgagtcagttctg
gtgtcagcgcatacttcagccggtaaaactgcagttgctgagtatgcgatagcaatggct
tttagagagaagcaaagggttatatatacttcaccattgaaagctttgagcaatcagaaa
tacagggagcttagtcaggagtttaaagatgtggggttgatgacaggtgatgttactctg
tcacctaatgctagttgtttggtcatgacaactgagattcttaggggaatgctttatagg
ggatcagaggttttaaaggaagtcgcatgggtcatatttgatgaaatccattatatgaag
gatcgtgaaagaggggttgtttgggaagagagtattatttttttgccgcctgctattaaa
atggtatttctgtcagcaacaatgtcgaatgccactgagtttgctgagtggatctgttat
ttgcacaaacagccatgtcatgtggtgtacactgatttccgaccgactcctctgcagcat
tacgtttttcccatgggtggaaatggtttgtatcttgtggtcgatgagaatgagcaattc
agggaggacaattttgtgaagctgcaggacactttctcaaaacagaaacttgatgttaac
aagggctctaatgggaaagcaggtgggaggattgcaagaggtgggaatgcttctggtggt
tctgacatatacaaaattgtgaagatgattatggaacggaaattccaaccggtgatcatc
ttcagcttcagtagaagggaatgtgaacaacatgcgatgtccatgtcaaagcttgatttt
aataatcaagaggaaaaggatactgtggaagaggtttttcgtaatgcaattctctgcttg
aatgaggaagacagaaacttacctgctattgagttgatgttgccactacttcagcgaggt
attgctgttcatcattctggtcttcttcctgttatcaaggaattggtggagattcttttc
caggaaggccttgtaaaggccctttttgctacagaaacatttgccatgggattaaacatg
ccagcaaaaactgttgttttcacagctgtcaagaagtgggatggtgatagtcatcgttac
attggttctggtgaatatatacagatgagtgggagggctgggcgccgtggcaaagatgag
cgtggtatttgtattataatggttgatgagcagatggagatgaactcactcaaggacatg
gttttgggcaaacctgcaccactagttagtactttcaggctgagctactactcaattttg
aatttaatgagtcgtgccgaaggccagtttactgctgagcatgtaatcaggaattcattc
catcaatttcagcacgagaaggccttacctgatatagggaaaaaagtttcgaagttggag
caggaagctgtggtgcttgatgcttcaggagaggctgaagttgctgaatatcataagcta
aaactagatatagcccaacttgagaagaagttgatggctgaaataaccaggcctgaaagg
gttctgtaccatcttcgtcctggtcggctggtcaagataagggaaggtggaacagattgg
ggttggggggttgtggttaatgttatgaaaaagccctccgctggggtaggtgcattgtca
tcacgtggggttggatatatagtagatactttacttcattgctcaccaggttcaagtgag
aatggttcacggccaaagccatgcccacctcatcctggagaaaagggtgaaatgcatgtg
gtacctgttcaattgcccttaatttctgctctaagcaaactgatggtatccattccttct
gatctccggccattggaagcgaggcaaagtatattgcttgccatacaggagctgaaaaca
cgttttccccaaggccttcctaagcttaatcctgtggaggacatgggcattaaagatccg
gaaattgtggagttggtgaaccaaattgaggaacttgaacagaagttatatgcacatcca
ctgcagaagtcccaagatgtgcaacagatgagaagtttcctgaggaaagcagaagtgaac
catgaaattcaacaacttaagtcgaaaatgcgtgattcccagcttcaaaaattccgtgat
gaacttaagaaccgttcacgggtcttgaaaaggcttggtcatattgatgctgatggtgtt
gtccagttgaagggacgggcagcctgcttgatagacacaggcgatgagctccttgtcact
gaactgatgtttaatggtacattcaatgatcttgatcatcaccaaattgcggctcttgca
agttgctttataccaggagacaaatctagtgagcagatacaactgcgaactgagcttgcc
agaccattacaacaacttcaagaaagtgcaagaagaatagcggagattcaatatgaatgc
aaactggagataaatgtggaagagtatgtggaatcaactgtaaggccgtacttgatggat
gtaatttattgctggtcaaagggagcaaattttgcggaggttatcgagatgacagatgtt
tttgagggtagtattattagaagtgctagaaggcttgatgagtttttgaatcagttgcgt
gctgctgctaatgctgtaggagaagttgatttagaaaacaaatttgcagctgctagtgaa
agccttcgccgaggtataatgtttgccaattccctgtatctataa
DBGET
integrated database retrieval system
