Juglans regia (English walnut): 108990927
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Entry
108990927 CDS
T05245
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108990927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108990927
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108990927
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_19
ARM_TT21_N
ARM_TT21
TPR_MalT
TPR_8
DUF627
ARM_TT21_2nd
Coatomer_E
HTH_Crp_2
Motif
Other DBs
NCBI-GeneID:
108990927
NCBI-ProteinID:
XP_018820600
UniProt:
A0A833UD57
A0A2I4EMI0
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All DBs
Position
10:33776728..33790329
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AA seq
862 aa
AA seq
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MDLRDSSSSTAAAAPNRDGYSGSDEDTLLSVAAALAKDAAFHFQSGNFAECVEVLKQLLL
KKENDPKVLHNVAIAEFFRDGGSDPKQLLEALNNVKKRIEDLASASGEQVEAASNLLNKV
TLGSKGSTMTHQLSSANNSNVVYTDEFDTSVAILNIGVIWFHLHEYAKALSVVEPLYQNI
EPIDETTALHICLLLLDVGLACNDAMKSADILSYMERAFGVGCMSQGDNGNTTQQQSGNL
VAKSSSFPLSNSSAMDVSHSDLAASVNASENSLSRTLSEEALDYETMFSSLDIGGQNSVR
PSGLSSPTNLTRTAVDRSFTTVDLKLKLHLYKVRFLLLTRNLKQAKREVKHVMNIARGKD
LSMALLLKSQIEYARGNHRKAIKLLVASSNRTDTAISSIFNNNLGCIYYQLGKFHTSSIF
FSKALTNTSYLRKEKPLKLSTFSQDNSFLIVYNCGIQYLACGKPILAARCFQKASLVFYN
RPLLWLRLAECCLMALEKGLIKASHAPSERSEVKVHVIGQGKWRQLVVEDGILRNRHVDS
VERDDCMLRSEGQLKLSMLLARRCLHNALHLLDCSESNHSKYDLSSNTSLEENESSGAAS
SRNSNHKNLQNIDSKTFTVTVGLGQANANGDAKEMKGGTSQEVIQNSLSYYEDICRNENQ
LIKQSILANLAFVELELENPMKALSITRSLLELPECSRIYIFLGHVYAAEALCLLNRPKE
AAENLLIYFSGGNNFDLPFSEEDCEQWQVERTVDSEELNGGSVTAKKNSTEDSQGIVFLK
PEEARAALYSNFAAVSAMQGQLEQAHQFATQALSILPNSREATLTSIYVDLMLGKSREAL
AKLKQYSRVRFLPSGVTMNRSS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcgagactcatcgtcatcgactgctgccgctgctcccaatcgcgacgggtac
tcgggctccgacgaagacacccttttatccgttgcggccgctctagccaaggacgccgcc
tttcactttcagtcgggaaatttcgctgagtgcgtcgaggtcctgaagcagctcttactc
aagaaggaaaacgatcccaaagttcttcacaatgttgcaattgccgaattctttcgggat
ggtggttcagatccgaagcagttacttgaagcacttaataatgtcaagaagagaattgag
gaccttgccagtgcatctggagagcaggtggaggctgctagcaatcttttgaataaagtt
actttggggtctaaaggaagtacaatgacacatcaactttccagtgcaaataattccaat
gttgtttacacagatgaatttgacacttctgtggcaatcctaaacattggggttatctgg
ttccatcttcacgaatatgcaaaggctttatcagttgtagaacctttgtatcagaatatt
gaaccaatagatgagacaacagctcttcatatttgcctcttgttgctagatgttggactt
gcttgcaatgatgctatgaagtctgctgatatattaagttacatggaaagagctttcggt
gttggctgcatgagtcaaggtgacaacggaaacacgacccagcaacagtctggaaaccta
gtagcaaaatcttcctcttttcctctcagcaattcatcggctatggatgtttctcattca
gatttagctgctagtgtgaatgcctcagaaaactctttatcaagaaccttgtcagaagag
gcacttgattatgaaactatgttctcatcactagatattggtggacaaaattcagtgagg
ccgtctggtctttcatctccaactaatctgacaaggactgcggttgataggtcttttacc
actgttgatttgaagcttaagttgcatctttataaagttcggtttctgcttctcactagg
aaccttaagcaagctaaacgagaagtcaagcatgttatgaatattgcacgtgggaaagat
ttgtccatggctctcctcctgaagtctcagattgaatatgcacgtggcaaccaccgtaaa
gccattaagctgttggtggcatcaagcaatcggacagacacagcaatctcaagcattttc
aacaacaatcttgggtgtatatattatcagcttgggaaattccatacgtcgtcgatattt
ttttcgaaggcgctgactaatacttcatatcttcggaaggaaaagccactaaagctgtca
actttctcccaggataattcttttctcatagtatataactgtggtatacagtacttggcc
tgtgggaagccaattcttgctgctcgctgtttccagaaagccagtttggtgttctacaac
cgacctctgttatggcttcgacttgctgaatgctgtctgatggctttggagaagggacta
ataaaagcaagtcatgctccatcagaaagatcagaagtcaaagtacatgttattggccag
ggcaaatggaggcaacttgttgttgaagatggaatattaagaaacagacatgtggattct
gttgaaagggatgattgtatgctgcgcagtgaagggcaactgaagctttcaatgttgctt
gcccgacggtgtctgcataatgctctgcacttacttgactgctccgagtcaaaccattca
aagtatgatttgtcttcaaatacctccttggaagaaaatgaatcaagtggagcagcttct
tcgaggaactcaaaccacaagaacttgcagaacattgattcaaaaacatttactgtaaca
gtaggtttaggtcaggctaatgcaaatggggatgccaaagaaatgaagggaggaacaagt
caggaggtcatacagaactctctctcctattatgaagatatttgtagaaatgaaaatcag
ttgatcaagcaatccattcttgctaacctggcgttcgtagagttggaactggaaaacccc
atgaaggccctgtcaatcaccaggtctctattggaacttccagagtgttccagaatttac
atatttcttggccatgtgtatgcagcagaggcactctgcttgttaaacaggccaaaggag
gctgctgagaatttattgatctatttttcggggggaaataattttgatttgccatttagt
gaagaggactgtgaacaatggcaggtggagagaactgtcgatagtgaagagttaaacgga
ggatcagtgactgccaagaagaattcaaccgaggactcgcaaggcattgtctttctaaag
ccagaagaggctcgtgcagcactttattcaaattttgctgctgtgtctgccatgcaaggt
caacttgagcaggcccatcaatttgcaacgcaagcactatccatattaccgaacagtcgg
gaagcaaccctgacttcaatttatgtggatctcatgcttggtaagtcaagagaagctctt
gccaagttaaagcaatatagtcgcgttaggttcctccccagtggcgtaacgatgaataga
tcttcttga
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