Juglans regia (English walnut): 108992202
Help
Entry
108992202 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108992202
09122 Translation
03013 Nucleocytoplasmic transport
108992202
03015 mRNA surveillance pathway
108992202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108992202
03041 Spliceosome [BR:
jre03041
]
108992202
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108992202
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108992202
Spliceosome [BR:
jre03041
]
Complex C
Other components
EJC/TREX
108992202
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108992202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108992202
NCBI-ProteinID:
XP_018822222
UniProt:
A0A833TCQ9
A0A2I4ES45
LinkDB
All DBs
Position
11:complement(35744555..35749326)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEAHAPTSALKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNNVQMRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccagggagaacgatgggtacgaggaagagcttgtagactacgacgacgaa
gaagcccatgccccaacctcagcgctcaaagttaatggcgaagccaccaagaagggctat
gttggaattcacagttcaggattcagagacttccttctgaagccagagcttcttcgtgct
attgtggactctggatttgagcatccttcggaagtgcaacatgaatgtatccctcaagcc
atcctgggaatggatgtcatttgccaagctaagtccggaatgggcaaaactgctgttttt
gttctttcaacattgcagcagattgaacctgttgccgggcaagtttctgcgattgtgctt
tgtcatacgagggagttagcttaccagatttgtcatgagtttgagagattcagtacatac
ctacctgatctcaaggttgccgtcttctatggcggggtaaatatcaaagttcacaaggat
ttgctgaaaaatgaatgccctcatattgttgttggaacacctggaagaatattagcactg
gcaagagataaggacctttctttgaagaatgtgaggcattttattctcgatgaatgtgac
aagatgcttgaatcactagacatgaggagagatgtgcaggagattttcaagatgactcct
catgataaacaagttatgatgttttctgcaacactcagcaaagaaatccggccagtttgt
aagagatttatgcaagaaccaatggaaatttatgttgatgacgaggccaagctgactctt
catggtcttgttcagcactacatcaaattaagcgagtcagagaaaaatcgcaagttgaat
gacctccttgatgcgttggactttaatcaagttgttatctttgtcaaaagtgtcagtaga
gcagctgagctgaacaagctactgaaggagtgtaatttcccctccatatgcatccattct
gggatgtcccaagaggaaagattgacacgctacaagggttttaaggaggggcagtcgagg
attctcgtggccacagacttggttggcaggggcatcgatatcgaacgcgttaacattgtc
attaattatgacatgccagattctgctgacacttacctgcacagggttggtagagctggt
cggtttggcaccaaggggcttgcgattacatttgtttcatctgcttctgactcggatgtt
ctcaataatgttcagatgaggtttgaggtggatataaaggaacttcctgagcagattgat
acctctacatacatgccatcgtaa
DBGET
integrated database retrieval system
