Juglans regia (English walnut): 108992842
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Entry
108992842 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108992842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108992842
03009 Ribosome biogenesis [BR:
jre03009
]
108992842
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108992842
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
108992842
Complex B
108992842
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
Helicases
108992842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108992842
NCBI-ProteinID:
XP_018823062
UniProt:
A0A2I4EUH5
A0A833YDM0
LinkDB
All DBs
Position
1:3383133..3397341
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AA seq
734 aa
AA seq
DB search
MAATVTISSTGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYEKPTGSVPPPKS
SSVPISSSVLVQQSSQGQLCGYSPDENDSYGRGSNGGSKFEVESRMQQNTRGETVHSSNT
ANGTLGAGPGGSSTRVHGASDVGVGFCAESYRRRHEITVTGDNAPPPFMSFEATGFPSEI
LREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRCRNNPQL
GPTVLVLSPTRELATQIQDEAVKFGKSSRILCTCLYGGAPKGPQLRDIDRGSDIVVATPG
RLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVTEVPPRRQTLMYTATWPKEV
RKIAADLLVNPVQVNIGNVDELVANKSITQHVEVLAPMEKHRRLEQILRSQEPGSKIIIF
CSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLSQFRNGRSPILVATDVAARGLDVK
DIRVVINYDFPTGVEDYVHRIGRTGRAGATGLAFTFFGDQDAKYASDLIKVLEGANQQVP
PEIRELASRGGGIGRSRRWGSGSGFSGRDGGRGGRNDSGHIGRGGWGFSSPSSGQPERSG
GRGYEHESHERYDRGYSYGQDRGRSRSPSPSKGSAWGEHSKGWNRDRSRSRDRSPVRSFH
QAMMERGRSSPPHQRQRVPPYNSGNAREPKGSPQGWGRSSGGGQDAGGFANGPHSSYFGE
EEEEGLIPQDEVDK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgtgaccatctcttccacaggtccacgatatgcacctgaggatcccacg
ctccccaaaccatggagaggccttgttgatggtaaaactgggtacctttacttttggaat
cctgagacgaatgtcactcaatatgagaagcctacagggtcagttcctccaccaaagtct
tcttcggttcctattagttcttcggtattagttcaacaatcttctcaaggacagctttgt
ggctacagtcctgatgaaaatgatagttatggcaggggcagcaatggtgggtcaaagttt
gaggttgagtcaaggatgcagcagaatacaagaggtgaaactgtccattccagtaatact
gcaaatgggacacttggtgctggacctggtggatcttctacacgagtacatggagcttca
gatgtaggagttggtttttgtgcagagtcttatcgtcgccggcatgaaataactgttact
ggcgataatgcgcctccaccttttatgtcatttgaagctactggctttccatctgagatt
cttagagaggtacacaatgctgggttctctgccccaactccgattcaggcacaatcatgg
ccgattgctcttcaaagtagagacatagtggccattgccaaaaccggttccgggaaaacc
ttgggttacttgattccgggatttattcatctcaagcgctgccgtaacaaccctcaattg
ggtccaactgtgttggttttgtcgccaactagggagttggcaacacagatacaagatgaa
gctgtgaagtttggaaagtcatcaagaattttgtgcacgtgtttatatggaggagctcca
aagggaccccagttgagagatatagatagaggatcggatatagtggttgctacccctggt
cgcttgaatgatattctggagatgaagagaattagccttcatcaagtttcttacctcgtg
cttgatgaggctgatcgcatgcttgacatgggttttgaacctcagataaggaagattgta
acggaggtgcctcctcgccgccaaaccctcatgtatacagcaacatggccaaaggaggtt
cggaaaattgcagcggatctgctcgtcaatcctgttcaggttaacattggcaatgtagat
gagcttgtcgcaaacaagtccatcacgcagcatgttgaagtattggcacccatggagaaa
cacaggcgactggagcagatactgcgatctcaagaaccaggatcaaagattatcatcttt
tgttcgaccaagaagatgtgtgaccaacttgcccgcaatcttacccgccagtttggtgct
gctgccattcatggagacaaatctcagggtgagagggatcatgtgttgagtcagtttcga
aatggtaggtctccaattcttgtagccactgatgttgctgctcgaggactggacgtcaag
gacatcagggtggttatcaactatgatttccctacaggagtggaggattatgttcatagg
attgggaggacagggagggcaggcgccacaggtctggcttttacattctttggtgaccag
gatgccaaatatgcttcagatctcatcaaagttttggaaggggcaaatcagcaagtcccc
ccagaaattcgtgaactggcatcccgtggtggtgggataggtaggtcaagacgttggggt
tctggttctgggttcagtggtcgtgatgggggccgcggtggacgtaatgattcaggtcat
attggaagaggtgggtggggattttcttctccctcttctggacagccagaaagaagtgga
ggccgtggatatgagcacgagtcacatgagaggtatgatcgtggttacagctatggacaa
gatagaggtcgcagtcgcagccccagccctagcaagggttctgcctggggtgaacacagt
aaaggttggaaccgtgatcgtagccgtagtcgtgaccgctccccagtgcgcagttttcac
caggcaatgatggaacgagggaggtcatccccaccacatcaacgccagcgtgtgccacct
tacaacagtgggaatgcaagggaacccaagggttcaccacaggggtggggcagatcctcg
ggtggtgggcaggatgctggaggatttgccaatggacctcactcttcttattttggagaa
gaagaggaggaaggcttgatacctcaggatgaggttgacaagtag
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