Juglans regia (English walnut): 108993342
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Entry
108993342 CDS
T05245
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
jre03009
]
108993342
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
108993342
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_DCAF4
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_HPS5
VPS8_N
Beta-prop_IFT122_1st
WDR54
Motif
Other DBs
NCBI-GeneID:
108993342
NCBI-ProteinID:
XP_018823802
UniProt:
A0A2I4EWM9
A0A833Y5X6
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Position
2:1168936..1173188
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AA seq
495 aa
AA seq
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MQKKCFRIPIYRCLHRVSHSEDMDKGREALVVCSDKSMGIGITIWDMATGDHLLHIPTSA
SPAHGFLCLRKQFLVASQIHRNGSIGGGAIFIWALNKPQPPLRSYPVEAIGPLSCTNDGI
YLAGGALSGNAHLWEIASGRLLKTWHAHHKSVNCLLFSNDDSLLISGSEDGMICVWSVIS
LIDMEDSRNLPPLLHYSSEHLSSITSLLTASGSSSSLLVSSSLDGTCKVWDFVTGRLIQT
QVYPLGVTASVLHSEEEILFCGCVDGRIFVNKLDIGLLEDSFFVAEDQAVVLKGHNGAIT
ALTISGLGLISASADCTICIWDVVNRMIIRRFNHQKGAVTNMVVIPQSSLLSASNHLGVL
NQFHVSLLDKYPQPANSSKGTATLLSLPRSFKGTQTSFDSRSTHSSNQHMSDLEKEQTPA
AMQMKVETCIENRMWATRMTKHVMEMNKHLQSRLLDLMQCRLLWPTEIDSTTSKKTKKLK
VESILQGAEEPQSST
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaaatgcttcagaattcctatatatcgatgtttacacagagtttcacactca
gaagatatggacaagggtagggaggctttggtggtttgcagtgataagagcatgggaatt
ggcataacgatatgggatatggcgacgggggatcatctcctacacatacccaccagtgct
tcccctgctcacgggtttctgtgcttgagaaagcagttccttgtagcctctcagattcac
agaaatggatctattggtggtggagccatctttatctgggcattgaataagcctcaacca
ccccttcggagttaccctgtggaggccattgggccactttcttgcacaaatgatggcata
tatctagcgggtggggcactttctggaaatgctcatctttgggagattgctagtggaaga
ttgctcaagacttggcatgctcatcacaaatctgtgaattgcttgctattttccaatgat
gattctcttcttatttctgggtcagaggatggtatgatctgtgtttggtcagtaattagt
ttgatagacatggaagattccagaaacttgcctcctttgttacattattcatcagagcat
ctatcctctatcaccagtctgctgacagcatcaggcagctcaagttcacttttagtatca
agctcccttgatggtacatgcaaggtttgggactttgtcaccggaaggcttattcaaact
caagtttatcctctaggagtaactgcaagtgtgcttcactcagaagaggagattttgttc
tgtgggtgtgtagacggaagaatttttgtcaacaagcttgatattggactattggaggac
tctttctttgttgcagaagaccaagcagttgtgttaaaaggacacaatggagccataact
gcattgaccatcagtggattgggtctgatatccgcatctgcagactgcaccatctgcata
tgggatgtagtcaaccggatgatcatccggagattcaaccatcaaaaaggggcagtaact
aatatggtggtgattccgcaatcctcactgctttctgcatcaaaccatttgggagttttg
aaccagtttcatgtttctttgcttgacaagtatcctcagccagccaactcatccaaggga
acagccactctcctttccctgcctcgttcctttaagggaacgcaaacttccttcgattcg
cgaagcactcattcatcaaaccagcatatgtcagacttggagaaagaacaaacaccggca
gccatgcaaatgaaggtggaaacatgcatagagaatcggatgtgggccacaagaatgaca
aagcacgtcatggagatgaataagcatttgcagtcacgtttgcttgacttgatgcagtgc
agattattatggccaactgaaattgactctaccacatccaaaaaaacaaagaagctgaag
gttgagagtatactacaaggggcagaggaaccacaatcttcaacttaa
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