Juglans regia (English walnut): 108993403
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Entry
108993403 CDS
T05245
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108993403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108993403
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108993403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
108993403
NCBI-ProteinID:
XP_018823852
UniProt:
A0A833XTR2
A0A2I4EWS5
LinkDB
All DBs
Position
4:26661204..26665909
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AA seq
484 aa
AA seq
DB search
MDSVMRMEMEPGKLFIGGISWDTNEDRLKEYFQSFGAVVEAVIMKDRATGRARGFGFVVF
ADPAVAERVVMEKHVIDGRTVEAKKAVPRDDQNILSRNNGSMHGSPGPARTKKIFVGGLA
STVTENDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKTFHELNGK
LVEVKRAVPKEQSPGPSRGQMGGYNYGQSRVSSFLNGYTQGYNQSSVGGYAHRVDNRFSP
VTVGRSGFHPFSPGYGTGLNNEPRLSPSYGGNANLSSHLSFGRGLNPSYTGNSNRNVNPI
GYGVGNGGNSSILNSASRNLLGNVNLNYAANSANPSTLMGLGSGNSGIGSFGNFGTLWSS
SPNSGQGGGAGTTHSSGNLSYGSGEVGFGSGGVGYGRNSGTGVALASSYAASNGSYRGSF
EEIYEGGSFYGDPTWRSSPLELEGSGSFGLGLGPGASDVLSRSSDDYVGLYGVTNRQSNR
GIAV
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtgatgagaatggaaatggagcctggcaagcttttcatcggtggaatatct
tgggacacaaatgaagaccgacttaaagagtatttccagtcttttggagcagtagtggaa
gctgtgataatgaaggatcgggccactggtcgtgcccgtggtttcggttttgttgttttt
gcagaccctgctgttgcagaaagagttgttatggagaagcatgtgatagatggtagaact
gttgaagcaaaaaaagcagttcctagagatgatcagaatattctgagcagaaacaatggc
agcatgcatgggtctcctggtcctgcccgcacaaagaagatatttgtaggaggtttagca
tccacagtcacagaaaacgattttaagaagtacttcgatcaatttgggataataacagat
gtggtggtgatgtatgaccataatacgcaaaggccaagaggatttgggttcattacatat
gattcagaggaagcagtggagaaagtgttgtacaaaacctttcatgaactcaatggcaaa
ctggttgaagttaaacgagctgtccctaaagaacaatctccagggccaagtcggggccaa
atgggtggatataactatggtcagagtagagttagcagcttccttaatggttacactcag
ggatacaatcaaagttcagttgggggctatgcacatagagtggataatagatttagtcca
gttacagttggtcgcagtggatttcatcccttcagtcctggatatgggactggattgaat
aatgagcccaggttgagtccaagctatggaggaaatgcaaaccttagttctcacctcagc
tttggacgcggattgaacccttcatatactgggaattcaaataggaatgttaaccccatt
ggatatggtgtgggcaatggtggaaatagttcaatcttaaattcagcaagccgtaacctg
ttggggaatgtgaatcttaattatgctgctaactctgcaaaccctagtactttaatggga
ttgggaagtggaaattcaggaattggttcttttggcaattttggaacactttggagctcc
tctcctaactcaggtcaaggtggaggtgctggaactacccacagtagtggcaatcttagt
tatggcagtggagaagtcggttttggttcaggaggggtagggtatggaagaaatagtgga
actggtgttgcactggcatcatcatatgctgcatcaaatggcagttacagagggtctttt
gaagaaatttatgaaggtggttcattttatggggacccaacttggcgatcatcacctcta
gagctagaggggtctggctcatttggtcttggccttggacctggagcttcagatgttttg
agtagaagctctgatgattatgttggtctttatggtgttaccaacagacaatcaaacaga
ggaattgctgtgtag
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