Juglans regia (English walnut): 108993689
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Entry
108993689 CDS
T05245
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108993689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108993689
03009 Ribosome biogenesis [BR:
jre03009
]
108993689
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108993689
Spliceosome [BR:
jre03041
]
Complex A
U2 snRNP components
U2 related factors
108993689
Complex B
108993689
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108993689
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
90S particles
Helicases
108993689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
AAA_7
ABC_tran
T2SSE
AAA_33
Flavi_DEAD
FtsK_SpoIIIE
AAA_30
TsaE
Microtub_bd
AAA_29
Motif
Other DBs
NCBI-GeneID:
108993689
NCBI-ProteinID:
XP_018824214
UniProt:
A0A2I4EXT8
LinkDB
All DBs
Position
8:complement(9952007..9957089)
Genome browser
AA seq
733 aa
AA seq
DB search
MGTERKRKVSLFDVVDDTSLPGKIGKSNGGGGVAAAAMSNNGISSGINRWTGRAYSQRYH
EILEKRRSLPVWHQKEEFLQVLKANQSIILVGETGSGKTTQIPQFVLEAVDIETPDKRRK
MMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREA
MTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRSDLKVVVMSATLEAEKFQGYFN
GAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDAC
RKISKEVANLGDQVGPVKAVPLYSPLPPAMQQKIFEPAPPSAKEGGPPGRKIVVSTNIAE
TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLY
TERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNY
LGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSTEFNCSNEILSISAMLSVPNCFVRPRE
AQKAADEAKARFGHIDGDHLTLLNVYHAYKQNSEDPSWCYDNFVNNRALKSADNVRQQLV
RIMARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHMERTGHYLTVKDNQVVHLHPSN
CLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLIDIAPHYYDLTNFPQCEAKRVLERLYK
KREKDREESKNRK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggaaaggaagagaaaggtgagcttgttcgatgtggtggacgacacctcgttg
ccggggaagatcgggaaatcgaacggcggaggaggagtagctgcggcggcgatgagcaac
aatggtatcagtagtgggatcaataggtggacagggagggcgtactcgcaaaggtaccat
gagatactggagaagaggaggagcttacccgtgtggcaccagaaggaggagttcttgcag
gtcctcaaggcgaatcagagtattatcctcgtcggtgagactggcagtggcaaaaccacg
cagattccccaattcgttttggaagctgttgatatagaaactccagataaacgcagaaag
atgatgattgcatgcacccaacctcgtagggttgctgcaatgtctgtttcacgccgtgtg
gccgaagagatggatgtaactattggagaagaggttggttatagcatccgttttgaagac
tgcagtagtgcaagaacagttttgaagtatctaacagatggtatgctcttaagagaagcg
atgacagatccacttctagaacgctacaaagttataatactcgatgaggctcatgaaaga
acattggcaacggatgttctatttggacttctgaaggaagtattgaaaaatagatctgac
cttaaggtagttgtgatgagtgcaactcttgaagctgaaaagtttcagggttattttaat
ggtgcaccgcttatgaaagttcctggtaggcttcatccagtggagatattctacacccag
gaacctgaaagggactatctggaggcggcaattcgaacagtagtgcagatccacatgtgt
gaacctcctggagatatacttgtgttcctcaccggcgaggaggagatagaagatgcatgc
cgaaaaatatcaaaagaggttgcaaatctgggtgaccaggtgggacctgtgaaagcagtg
cctttgtattctcccctcccgccagcaatgcagcagaagatatttgaaccagctccacct
tcagcaaaggagggtggtcctccaggaaggaagattgtggtgtcaacaaacattgcagaa
acttctctgaccatcgatggtatagtatatgttattgaccctgggtttgcgaaacaaaaa
gtttataacccaagagtgcgtgttgaatccttgttggtatctccgatatctaaggctagt
gcacaccagagatcagggcgtgctggaagaactcagcctgggaaatgctttagactctat
acggagagaagcttcaataatgatcttcagccacagacctatccagaaatattgagatca
aaccttgcaaatactgttcttaccttgaaaaaactggggatagatgatcttgtgcatttt
gattttatggacccacctgccccggagacattgatgcgcgccctagaggttttgaattac
ttgggtgcattagatgatgatggaaatttaacaaagcttggggaaattatgagcgaattt
ccattagatcctcagatgtcaaagatgctcgttgttagcactgaattcaattgttcaaat
gaaattctttcaatctctgccatgctttcagtacccaattgctttgtccggcctagggag
gctcaaaaagctgctgatgaagcgaaagctaggtttgggcacatcgatggagatcacctc
acactcttgaatgtatatcatgcttacaagcaaaacagcgaggatccctcttggtgttat
gataactttgtcaataatagggcattgaagtctgctgataacgttagacaacagctagtg
cggatcatggccaggtttaacctcaagttgtgtagcactgatttcaacagccgtgactac
tacatcaacataaggaaggctatgctagcagggtacttcatgcaggtagctcacatggaa
cgtactggacactacttgacagtgaaagacaaccaagtggtgcacttgcatccatcgaat
tgcttggatcacaagccagagtgggtaatttataatgagtatgtgctaaccagcaggaat
ttcattcgcacggtgacagacattcgtggtgaatggctgattgatatagcaccacactac
tatgatctgacgaacttccctcagtgcgaggccaaacgtgttcttgaaaggctttacaag
aagcgggagaaggacagggaggagagcaagaacagaaaatga
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integrated database retrieval system
