Juglans regia (English walnut): 108994160
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Entry
108994160 CDS
T05245
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03030
DNA replication
jre03420
Nucleotide excision repair
jre03430
Mismatch repair
jre03440
Homologous recombination
jre03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108994160
03420 Nucleotide excision repair
108994160
03430 Mismatch repair
108994160
03440 Homologous recombination
108994160
03460 Fanconi anemia pathway
108994160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
jre03000
]
108994160
03032 DNA replication proteins [BR:
jre03032
]
108994160
03400 DNA repair and recombination proteins [BR:
jre03400
]
108994160
Transcription factors [BR:
jre03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108994160
DNA replication proteins [BR:
jre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108994160
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108994160
MMR (mismatch excision repair)
108994160
DSBR (double strand breaks repair)
HR (homologous recombination)
108994160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
108994160
NCBI-ProteinID:
XP_018824823
UniProt:
A0A2I4EZJ9
LinkDB
All DBs
Position
2:8787906..8791895
Genome browser
AA seq
637 aa
AA seq
DB search
MAISVTPKAVSTILSNPSPESSSDVPDLVVQVVDLKATGTSGNRFMFSASDGERKLRAIL
PSNMSTEVMSGNIQNLGLIRILDYTLNDIPNKPDKYLIVTKCEVVSPSLEMEIKTEVKLE
TEIKPECRSEGTGILLKPKQENEIKTEIKSEGPGILLKTKQEIVAKSAAQIVHEQRENMA
PAARMSMTRRVFPLVSLNPYQGSWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEEGTQ
IQATMFNEAAKKFYDRFQLGKVYYISKGTLKLANKQFKTVKNDYEMTLNENSEVEEAGNE
EAFVPETKFNFVQIDQLGPYVNANELVDIIGVVQNVSPTMSIRRKSNNETIPKRDITVAD
ETKKTVVVSLWNEHATNLGQELLDIAEKSPIVAIKSLKVGDFQGVSLSAISRSIVLVDPD
IPEAKKLRSWYDSEGKESSMASVSSGMSPSRNGLRSMYSDRVSISHITKNPSLGEDKPAF
FSIRGYISFIRPDQTMWYRACKTCSKKVTEALGSGYWCEGCQKNEEECSLRYIMVVKVSD
GSGEAYFSTFNEEAEKIVGCSADELDKLKSQMEEENSYQLKLKQATWNPHLFRVSVAQHE
YNNEKRQRITVRAVAPVDFAAESRFLLEEISKMRVPK
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcaatttccgtgaccccaaaggcggtctctactatactatcaaacccgtcgccggaa
tcttcgtccgatgttccggatctcgttgtccaagttgttgatctcaaggccaccggtact
tccggtaatcgtttcatgttttcagctagcgatggagagaggaagctaagagcgattctg
ccatcaaatatgagtactgaagtgatgtcgggaaatattcaaaacctgggtctcatccgc
atcctcgattatactctcaatgacattccaaataagcctgataaatacctaattgtcacc
aaatgcgaagtggtttctccttcgcttgaaatggagatcaaaactgaggtcaagctagaa
acggagatcaagcccgagtgcaggagcgagggaactggcattttgttgaaaccaaagcaa
gaaaatgagataaagactgagataaaaagtgaaggacctggcattcttttgaagacaaag
caggagatcgttgcgaaatcggctgctcagatagtacatgagcaacgtgagaatatggcc
ccagctgcacggatgtccatgactcgaagagtttttcctttggtatccttgaatccatac
caaggcagttggaccataaaggttcgtgttacaagcaaagggaatatgcgtacatataag
aatgccagaggagaaggctgtgtcttcaacgtggagttaacagatgaagaaggcacacaa
atacaagcaacaatgttcaatgaagctgcaaagaaattctatgacaggtttcaattaggg
aaggtttattacatttcaaagggaactctaaaacttgccaacaagcagtttaagacagtg
aaaaatgattatgagatgaccttgaatgagaattcagaggtagaagaggctggcaatgaa
gaagcctttgttcctgaaacaaaatttaattttgtccagatcgatcagttaggtccttat
gtgaatgctaacgagcttgtggatattattggcgttgttcaaaatgtgtctcctacaatg
agcattcggaggaagagtaacaatgagacaatcccaaagcgtgatattactgttgctgat
gagacgaaaaagacagttgtggtctccttgtggaacgagcatgcaactaacttagggcag
gaattgttggatattgctgagaaatctcctattgttgcaattaagtccctaaaagttggg
gactttcaaggcgtatctttgtcagcgattagcagaagtatagtacttgtggatccagat
ataccagaagcaaagaagttgagatcctggtatgattccgagggtaaagaaagttcaatg
gcttctgtcagctctggtatgagcccatcaaggaacggattgaggtcaatgtactcggac
cgagtctccatttctcatatcaccaaaaacccatccttgggcgaggacaagcctgcgttt
ttcagcattagaggatatatcagcttcatcaggcctgatcaaacgatgtggtaccgtgct
tgcaaaacttgcagcaaaaaagtgacagaggctttggggtctgggtattggtgtgaaggg
tgccagaaaaatgaggaagagtgcagcttaaggtacataatggtggtcaaagtttctgat
gggagtggtgaagcatatttctctacttttaatgaagaagcagagaaaattgttgggtgc
tctgctgacgaacttgataagctgaaatcccagatggaagaagagaattcataccaactg
aaactgaaacaagctacatggaatcctcatcttttccgggttagcgttgctcagcatgag
tacaataacgaaaagaggcagaggatcacagtcagggctgttgctccagttgattttgct
gctgaatcaagatttttactggaagagatatccaagatgagagttcctaaatag
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