KEGG   Juglans regia (English walnut): 108994911
Entry
108994911         CDS       T05245                                 
Name
(RefSeq) uncharacterized protein LOC108994911
  KO
K06100  symplekin
Organism
jre  Juglans regia (English walnut)
Pathway
jre03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108994911
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    108994911
   03019 Messenger RNA biogenesis [BR:jre03019]
    108994911
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     108994911
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     108994911
    U7-dependent histone pre-mRNA processing factors
     108994911
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT_2
Other DBs
NCBI-GeneID: 108994911
NCBI-ProteinID: XP_018825865
UniProt: A0A2I4F2J0
LinkDB
Position
3:32669517..32694111
AA seq 1339 aa
MVAMMMATNKREKLASLINSAKSASDIPSKLESLRQLKQNLLHEDPSLLSEFLSPLLDLQ
SDRFSPVRKLVAEMIGEIGLKHMEFLPEIVPALITVVDDGTPAVARQAITSGIDLFRSTL
ERVAIQGLYSSELSSSVESSWAWMLKFKDKIYSMAFQLGSGGTRLLALKFVEAVILLYTP
DPNGLSEPPTNEGESVQFNISWLRAGHPVLNVGNLSIEATHSLGLLLDQLRFPAVRSLSN
SAIIVLINSLSAIAKQRPAFYGRILPVLLGLEPSSSVINGMHVSAAHHALKGAFLTCLKC
THPGAAPWRDSLVDALREMKAGGLAEQTLHQFSKITGSLGEGKEDFPVIKEEKVTCIAGD
AVDSNLGRKRSGAPGNSDPAEDRDMPEKRMKASPSVSEESTRELDKSITIPQDGIPSTRP
TTSRGDVDTGPAQQLVAMFGALVAQGEKAIGSLEILISSISADLLAEVVMANMRYLPPNL
SKAEGDDLLMNMTIVGSDTDAKYPPSFIADVLSLSSTFPPIVSLLDAHQSMSNEIVKPHS
KEEHAASVADSVVAHSDMDHDSDDAILPAGVSASSDIVLSEMEKGCFPITSDIHDMGNLE
SEIPGLDSSALTDGLSETQVASSLASTDLEDASQEQVTSLVQTTLNLHPSMSTDRSEELS
PKAAVTDVSSLVSSTETSVGLSFHVILPKMSAPVVYLDDEQKDHLQKLAFIRIVEAYKQV
AVAGGAQVRFSLLAYLGFEFPLELDPWKLLQKHILEDYMGHEGHELTLRVLYRLYGEQVE
DRDFFSYTAAASEYEKFLLTVAETLRDSFPPSDKSLSRLFDEAPDLPKSVLKLLESMCSP
GNFDKAEELQSGDRVTQGLSVVWRLIIQRPPIRDVCLKIALQSAVHHLEEVRMKAIRLVA
NKLFPLSSNAKQIESFAKEMLFSVIGDDVADGIDTEGSVREAQKDSEIEKPVDERLSVSA
NSKDISSDTHQSSMCHSVSSLSVSEAQRCMSLYFALCTKKHSLFREIFVVYKSMPKTVKQ
AIHRQIPVLVRTMGSSSDLLEIISDPPSGSKNLLMQVLQILTDGTIPSSELLFTIRKLYD
SKVKDLEIVIPILPFLPKDEVKLIFPHVVNLPPEKFQSALARILKGLSHSGPVLTPAEVL
IAIHGIDPEKDGIPLKKVTDACNACFEQRQVFTQQVLAKVLNQLVEQIPLPLLFMRTVLQ
AIGAFPALVDFIMEILSRLVSKEIWKYPKLWVGFLKCAFLTKPQSFGVLLKLPPAQLENA
LARTAALKAPLITHASQPNIRSSLPRSVLAVLGIVPDSETSSQAQTGVAPDSQNSSQVQT
SQADSGHMSNSDKVVTEKS
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggtggcaatgatgatggccacgaacaagagggagaagctcgcgagtctgataaattcg
gccaagtccgcttccgatataccgtccaaacttgaatccttgcgtcaattaaagcagaat
ttgctccatgaagacccttccttgctctccgagttcctctctcccctcctcgacctccag
tccgatcggttcagtccggttcgcaagctcgttgcagagatgataggtgaaatcggctta
aagcacatggaattcctacctgaaattgtacctgcgctgattactgttgtggacgatggt
acaccagctgttgctcgacaagccatcactagcgggattgatttatttcgttcaactctt
gaaagagttgcaattcagggtctctattcaagtgaattgagcagttcagttgagtcatca
tgggcatggatgttaaaattcaaggacaaaatatattccatggcttttcagctgggaagt
ggtggaacaaggttgctggcactgaagtttgttgaagctgtcattcttctttatacacct
gatcctaatggcttgtcagagcctcctactaatgaaggagagtctgtgcaatttaatata
tcttggcttcgtgcgggtcatccagtgcttaatgttggaaatttgtcaattgaagccact
catagtttgggtctattgcttgatcagcttaggtttccagcagtcagatctcttagtaac
tctgcaataattgtgctcattaatagtctctcagcaatcgcaaaacaaaggcctgcattc
tatggacggattctgccagttttacttggtttggagccctcaagctctgtaatcaatgga
atgcatgtttctgcggcacatcatgctttaaaaggcgccttcctcacctgcttgaaatgt
actcacccgggtgctgcaccgtggcgagatagtttggtggatgccttgagagagatgaaa
gctggagggttggcagagcaaactcttcaccaattttctaagattactggaagtctaggt
gaaggaaaagaagatttcccagttattaaggaagagaaggttacatgtatagcaggtgat
gctgtggatagtaatttgggaagaaaaagatctggagcaccaggaaacagtgatccggct
gaagatagagatatgcctgaaaagcgtatgaaagcatcgcctagtgtctcagaggaatct
actagagagttggataaaagtatcacaattcctcaagatggaattccatcaactcggcca
accacttccagaggagatgttgatactggacctgcgcagcaacttgttgctatgtttggt
gccttggttgctcaaggcgaaaaagccattggctctttagagattcttatatcaagtatc
tctgctgacttgctagcggaggtagtgatggctaatatgcgttaccttcctcccaatctt
tccaaagctgaaggagatgatttgctgatgaacatgactatagttgggagtgatactgat
gctaaatatcctccatcatttatagcagacgttctgtcactttctagtactttcccaccg
atagtctcactgttagatgctcaccagtctatgtccaatgaaatagtgaaacctcatagc
aaggaagaacatgctgcttctgtagctgatagtgttgttgcacattctgacatggaccat
gattctgacgatgcaattttgcctgctggtgtatcagcttcttctgatattgttttgtct
gaaatggagaaaggttgttttccaattacatctgatatccatgacatggggaatctagag
agtgagatacctggcttggattcttctgctcttactgatggattgtcagagacacaggtt
gcttcctccttggcctccactgatctggaagatgccagtcaagagcaagttacaagtttg
gttcagacaacactgaatttacatccatcaatgtcaacagacaggtccgaggaacttagc
ccaaaggcagctgttacagatgtcagcagtctggtctcatcaacagaaacttctgttggg
ttgtcttttcatgtcatcttgcccaagatgtcagcacctgttgtttaccttgatgatgaa
cagaaggatcatttgcagaaattggcttttatacgcattgttgaggcatataagcaagta
gcagttgctggaggtgcacaagtccgcttttcactgcttgcatatttagggtttgagttt
cccttggagctagacccttggaaactgttacaaaagcatatactggaagattacatgggt
catgagggacatgagttgaccttgcgtgtcctctacaggttatatggcgagcaagtagag
gaccgtgacttcttttcttacacagctgcggcttctgaatatgaaaaattccttcttact
gtggcagagacacttagagattcttttccaccttcagataaatcactaagtagattgttt
gatgaagctcctgatctgccgaagtcagttttaaaattactagaaagcatgtgttctcct
ggaaactttgataaagctgaggagttacagagtggggatcgtgttactcaaggtctcagt
gttgtgtggagattgattatacagaggccacccattcgagatgtctgcttgaaaattgcc
ttacagagtgcagtccatcacttggaggaagtgcgtatgaaggcaatacgtctggtggca
aacaagctttttcctttatcatcgaatgccaaacagattgaaagttttgcaaaagaaatg
ttgttctctgtaataggtgatgatgtggcagatggaattgatactgaaggatcagtcaga
gaagcacagaaggattctgagattgaaaagcctgtggatgaacgtctgtcagtgagtgcc
aacagtaaggatatttcctctgatactcatcaatcgagcatgtgtcacagtgtttcctcc
ctttcagtctcagaggcacagcgttgcatgtctctgtattttgccttgtgtactaagaag
cactcccttttccgcgaaatatttgtagtctataagagcatgccaaagacggttaagcag
gccattcaccgccagattccagtactagtccgtactatgggctcatcatcagatctactt
gaaataatttcggatcctccaagtggaagcaagaaccttctaatgcaggttttgcaaata
ctgacagatgggacgattccctcctcagaattattgtttacaataagaaagttatatgat
tcaaaagtaaaggatttagagattgttatcccgatcttgccattccttccaaaggatgag
gttaagctgatttttccccatgttgtgaatcttccaccagaaaagttccagtcagcactt
gcccgcatactaaagggattgtctcattcgggtccagtgctcactccagctgaagtgcta
attgctatccatgggattgaccccgaaaaagatggaattcccttgaagaaggtcacagac
gcttgcaatgcatgttttgagcagaggcaagtattcacccaacaagtgcttgcaaaagtt
ttgaatcaattggttgagcagatccctcttcctttattgttcatgcgaaccgtattacaa
gccataggtgctttcccagcactggtggattttataatggagattctgtctcgtcttgtg
agcaaggagatttggaaatacccaaagttgtgggtaggattcttgaagtgtgctttcttg
acaaagcctcagtcatttggtgtgttgcttaagctacctccagcacagctagaaaacgca
ttggctagaactgcagcactgaaagcaccattgatcactcatgctagccaaccaaatatc
cgttcttcccttccaagatctgttttggcggttcttggaattgtaccagattctgagact
tcaagtcaagcacaaactggagttgcccctgattctcagaattctagtcaggtgcaaaca
agtcaggctgacagtggacatatgagtaactcggataaggtggtgacagagaaatcttga

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