Juglans regia (English walnut): 108995190
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Entry
108995190 CDS
T05245
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108995190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jre03400
]
108995190
Enzymes [BR:
jre01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
108995190
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
108995190
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
108995190
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108995190
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108995190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
AAA_29
nSTAND3
CPT
RsgA_GTPase
ERM_C
Zeta_toxin
AAA
AAA_17
AAA_25
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
108995190
NCBI-ProteinID:
XP_018826245
UniProt:
A0A2I4F3L6
A0A833XUY9
LinkDB
All DBs
Position
4:1616452..1622911
Genome browser
AA seq
756 aa
AA seq
DB search
MDIENAAKAKGEEINVKSVVVILVGAPGSGKSTFCDQVMPSSTRPWVRICQDTIGNGKSG
TKAQCLKSAASALKDGKSVFIDRCNLDREQRLEFVKLGGPNVDVHAVVLDLPAKLCISRS
IKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFTRITLCLNESDVQACLNTYSALGPM
DTLPNGYFGQKNPDAKIQLGIMKFLKKAEVPAANTISDASRIQSSFSPQVFQEKNPGYKR
VENVSSFPVNTAKDLKECEDLAVCSAGSHILNDDAPTLAFPSISTSDFQFDLEKASDIII
KKVEEFVNKLGNVRLVLVDLSHRSKILSLVKAKATEKNIDSSKFFTFVGDITRLCSERGL
HYNVIANAANWRLKPGGGGVNASIFNAAGPALEVATKEQAKSLQPGKSVAVPLPSTSPLF
SREGITHVIHVLGPNMNPQRPNCLNNDYITGCKVLSEAYTSLFEDFASIVRTQAKLAKGK
NVNLVTNPLGLQEHNEGVNMKHSPNNDQKSKREDVNYYDKSKKYKGSLYEAEANIHDFRT
EKEHTNNDKIDASTTKVWGSWAQALYHIAMHPEKHKDVVLEILDDVVILHDLYPKARRHL
LVLTRSEGLDCLTAVRKEHLNLLRTMHDVGMRWVEKFLQEDASLIFRLGYHSAPSMRQLH
LHVISQDFDSKHLKNKKHWNSFNTAFFYDSVDVIKDVSNHGKATLRDDESLLSTELRCHR
CRSAHPNIPRLKSHISNCRAPFPHSLLQSGRLVLPP
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggacattgaaaacgctgctaaagccaaaggcgaagaaataaatgtgaagtctgttgtg
gtgatattggtgggtgccccaggtagcggcaagtccaccttttgtgatcaagtcatgccc
tcctctacgcgaccgtgggttcgcatttgccaggataccattgggaatggtaaatccgga
acaaaagcccagtgcctaaaaagtgcagctagtgcacttaaggatggaaaaagtgtattt
attgaccgatgcaatctagacagagaacagcggttggaatttgtgaagctcggtggtccc
aacgtagatgtgcatgctgttgtacttgatcttcctgctaagctatgtatatcccgatct
attaaacggaccgggcatgaaggaaacttacaaggtggaaaagctgctgcggtggtgaat
agaatgctacaaaagaaagaattgcccaaactaagtgaggggttcactcggatcacactt
tgcctgaatgagagtgatgttcaagcttgtcttaacacatacagtgcacttggtcctatg
gacacccttccaaatggatactttggtcagaagaacccagatgccaaaattcaacttggt
ataatgaagttcttaaagaaagcggaggttcctgccgctaatacaatttctgatgcaagc
aggattcagagttctttttctcctcaagtttttcaggaaaagaaccctggatataaaaga
gtggaaaatgtttcttcatttccagtaaatactgctaaggacttaaaggaatgtgaagac
ctggcagtttgctctgctggcagtcatattttgaatgatgatgctcccactctcgcattt
ccatctatttcgacatcagatttccaatttgacctcgagaaggcctctgatattatcatt
aagaaagttgaggaattcgtgaataagcttgggaatgttaggcttgtgttggtggacttg
tctcatagatcaaagattttgtctttggtcaaggcaaaagctactgaaaaaaacattgac
tccagtaagttcttcacatttgtaggagacattacacgactttgttcagaaagaggtttg
cactacaatgtaatagctaatgccgcaaactggcggctgaagcctggaggtggaggtgtg
aatgcttcaatcttcaatgctgctggcccagcccttgaggttgctaccaaagaacaagct
aaatctcttcaaccggggaagtctgtggctgttcctcttccttcaacttctcccttgttt
agtagggaagggattacccatgtcatacatgttcttggaccaaatatgaacccacaaaga
ccaaattgtctgaacaatgactatattacaggctgcaaagttctcagtgaggcctacact
tcattatttgaagattttgcatccatagttaggacccaagcaaagttggctaagggaaaa
aatgttaaccttgtgacaaaccctctagggctacaagaacacaatgagggtgtcaatatg
aagcattctcccaataacgatcaaaagagtaagagagaggatgtcaattactacgataaa
agcaaaaagtacaaaggatctctgtatgaagctgaagccaatatccatgattttagaact
gagaaggaacacacaaacaatgacaagattgatgcaagcacgaccaaggtgtggggatcc
tgggctcaagctctctaccatattgccatgcatcctgagaaacacaaggatgttgtgctg
gagattttggatgatgttgtaatattgcatgatctttatcccaaggcgagaaggcatctt
ttggtgttgactcgatctgaaggtcttgattgcctcacagctgtacgtaaagaacacctg
aatttgttaaggacaatgcatgatgtgggtatgcgttgggttgagaagttcttgcaagaa
gatgcatcgttgatttttcgccttggatatcactcggccccatcaatgcgacaactgcac
ctgcatgttattagccaagattttgattcaaaacatttgaagaataagaagcactggaac
tcatttaatactgctttcttttacgattcagtggatgtaattaaggacgtcagcaatcat
ggtaaagcaacattaagagatgatgaaagcctgttatctacagaattgcgttgtcatcga
tgcagaagtgcgcaccccaacatacctcggttaaaatcacatattagcaattgtcgggcc
ccctttccacactctttacttcaaagtggccgtctggtgctaccaccataa
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