Juglans regia (English walnut): 108995646
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Entry
108995646 CDS
T05245
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108995646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108995646
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108995646
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_19
TPR_1
TPR_MalT
ARM_TT21
TPR_8
TPR_15
ARM_TT21_N
Coatomer_E
HTH_Crp_2
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
108995646
NCBI-ProteinID:
XP_018826780
UniProt:
A0A2I4F552
A0A833YAW1
LinkDB
All DBs
Position
1:41261098..41278015
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AA seq
859 aa
AA seq
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MDARDSSSSMAAAAPNRDGSSGTDDDAVLSVVAALAKDAALHFQSGKFAECAEVLNQLLL
KKENDPKVLHNVAISEFFRDGCSDPKKLLESLNNVKKRIEELACASGEQVEAVSNLLNKV
TLGSKGSTMANQLSTTNSSNIVYTDEFDTSVAILNIAVIWFHLHEYTKALSVLEPLYQNI
EPIDETTALHICLLLLDVGLACNDASKSADVLIYLERAFGVSCTSQGDNGNTTQQSGNLV
AKSSSVPSPATDASHSDLAASVNASENTLSRTLSEEALEYETMFSTLDIGGQNRVRPSGI
SSSNDLSRPTVDRSLTTVDLKLKLQLYKVRFLLLTRNLKQAKREVKHVMNIARGNDSSTE
ALLLKSQIESARGNHRKAIKLLVASSNRTDMAISSIFNNNLGCIYYQLGKYHTSSIFFSK
ALTNTSSLRKEKPLKLSTFSQDNSFLIIYNCGIQYLACGKPILASRCFQKASLVFYNRPL
LWLRLAECCLMALEKGLLKTNHAPSERSEVKVHVVGQAKWRQLVVKDGISRNRHVDSVEG
DTFTLRSDGQPKLSMSLARQCLHNALHLLNSSEWNYSKSDLPSSSSLEENESSEAASSKN
SNYKNLNNIDSKAFTVTIGVGQANANGDAKEPKGGTSQELIQNSLSYYEDIQRRENQLIK
QAILANVAYVELELQNPTKALLTARSLLELTECSRIYIFLGHLYAAEALCLLNRPKEAAE
HLSIYLFGGSNFDLPFSEEDWKQWQVERTVDSEEFNGVSVTTMNSLAEDPQGIVFLKPEE
ARAALYANFAAVSAMQGELEQAHQFATQALSILPNSREATLTLIYVDLKLGKSTEALAKL
KQSSRVRFLPSGVTLNNSS
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcgagattcctcgtcctcgatggctgccgctgctcccaatcgcgacgggtcc
tcgggcaccgacgacgacgccgttttgtccgttgtggctgcgctcgccaaggacgccgcc
ttgcacttccagtcgggaaagttcgccgagtgcgccgaggtcctgaaccagctcttgctc
aagaaggaaaacgatcctaaagttcttcacaatgttgcaatttccgagttctttcgggat
ggctgctcagatcctaagaagttgcttgaatcacttaataatgtcaagaagagaattgag
gagcttgcctgtgcatctggagaacaggtggaggctgttagcaatcttttgaataaagtc
actttggggtctaaaggaagtacgatggcaaatcaactttccacaacaaatagttccaat
attgtttacacagatgaatttgacacttccgtggcaatcctaaacattgcggttatctgg
ttccatctccatgaatatacaaaggcattatcggttctagaacctttgtatcaaaatatt
gaaccgatagatgagacaacagctcttcatatctgcctcttgttgctagatgttgggctt
gcttgcaatgatgcttcaaagtctgctgatgtattaatttatttggaaagagcttttggt
gttagttgcacaagtcaaggtgacaatggcaacacaacacaacagtctgggaacctcgtt
gcaaaatcttcctctgttccttcaccggctacagatgcttctcattcagatttagctgct
agtgtgaacgcctcagaaaatactttatcgaggaccttatcagaggaggcacttgaatat
gaaaccatgttctcaacactagatatcggtggacaaaatcgagtgaggccttctggtatt
tcgtcttcaaatgatctgtcaaggccaactgttgataggtctttgaccacagttgatctg
aagcttaagttgcagctttataaagttcggtttctgcttctcactaggaacctcaagcaa
gcaaaacgtgaagtcaagcatgttatgaacattgcacgtgggaacgattcatcaacggag
gctctcctcctgaagtctcagattgaatctgcacgcggcaaccaccgtaaagccattaag
ctgttagtggcttcaagtaatcggacagacatggcaatttcaagcattttcaacaacaat
cttgggtgcatttattatcagcttgggaaataccacacatcatcaatatttttttcgaag
gcactgactaatacttcatcacttcggaaggaaaagccgctaaagctgtcaactttctcc
caggataactcttttcttataatatataactgcggtatacagtacttggcctgtgggaaa
ccaattcttgcctctcgctgcttccagaaggccagtttggtgttctacaaccgacctctc
ttatggctccgacttgctgaatgctgtctgatggctttagagaagggactactaaaaact
aatcatgctccatcagaaagatcagaggtcaaagtccatgttgttggccaggcaaaatgg
aggcaacttgttgtcaaagacgggatatcaagaaacagacatgtggactctgttgaaggg
gatacttttactctgagaagtgatgggcaaccaaagctttcaatgtcgcttgcccggcag
tgtctgcacaatgctctgcacttgctgaactcttcggagtggaactattcaaaatctgat
ttgccctctagttcctccttggaggaaaatgaatcaagtgaagcggcttcgtctaagaac
tcaaactacaagaacttaaacaacattgattcaaaagcatttactgtaacaataggtgta
ggtcaggctaatgcaaatggtgacgccaaagaaccaaagggaggaacaagtcaggagctc
atacagaattctctctcctattatgaagatattcagagaagagaaaatcagttgatcaag
caagctattcttgctaacgtagcctatgtagagttggaactgcaaaaccccacgaaggcc
ctgttgaccgctaggtctctcttggaactaacagaatgttctagaatttacatctttctt
ggacatttgtatgcagcggaggccctctgcctgttaaatagaccaaaggaagctgctgag
catttgtcgatttatttgtttgggggaagtaattttgatttgccattcagcgaagaggac
tggaagcaatggcaagtggagaggaccgtcgatagcgaagagtttaatggagtatcagtg
actaccatgaattctttagctgaggacccacaaggtatcgtcttcctaaagccggaagag
gcgcgtgcagcactttatgcaaattttgctgcggtgtctgccatgcaaggcgaacttgag
caggcccatcaatttgcgacgcaagcactatccatattacccaacagtcgggaagcgact
ctgactttgatttatgtggatctcaagctcggtaagtctacagaagctcttgccaagtta
aagcagagtagtcgcgtcaggttcctccccagtggcgtaacattgaataattcttcttga
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