Juglans regia (English walnut): 108996575
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Entry
108996575 CDS
T05245
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108996575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108996575
03019 Messenger RNA biogenesis [BR:
jre03019
]
108996575
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108996575
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108996575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
108996575
NCBI-ProteinID:
XP_018828092
UniProt:
A0A833Y2V6
A0A2I4F8W7
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All DBs
Position
3:complement(10704973..10722357)
Genome browser
AA seq
704 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGPNANAAVASGPHVVQSDSAVGAAAANAASAGPGTAAFVADS
AAAGGNLASGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQD
CVYKHTNEDIKECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNSSN
RFFQQRNGNFPQQAEKSQFPHGPNTANQGVVKPSTNESSNVQQQQQSKQQVSQNQTPNIP
NGLLNQTNRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMTSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHNT
RHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMEISLAAESKREEEKAKG
VDPDNRGENPDIVPFEDNEEEEEEESEEEEESFSQIPGAAMQGRGRGRGIMWPPHMPLAR
GARPMPGTQGFPPVIMGADGLSYGPITPDGFPMPDLFGVGPRPFAPYGPRFSGDFTGPNS
GMMFRARPSQPFPAGGFGMMMGPGRAPFMGVMGVAGAHPTRPGRPVGMPQMFPPPPPPSS
QNINRVMKRDQRVNDRNDRYNAASEQGKGQEMPSPGVGPDDETRFQHGFKAHHEDHYGGG
NNFKNDESESEDEAPRRSRHGEGRKKRRGSEGDTTTGSDHLQMP
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggagggggttctcagctttgacttcgagggcggcctcgacgccggtcca
aatgccaacgccgccgtcgcctcggggccccacgtcgtccaatctgattccgccgtcgga
gccgcggctgccaacgcggcctccgcgggccccgggactgcggccttcgtagctgactcc
gccgccgcggggggcaacctcgcctcggggaggcggagcttccgtcagacggtgtgccga
cactggctccgaagcctctgtatgaaaggcgacgcctgcggcttcctccaccagtacgac
aagtcgcggatgcccgtctgccgcttcttccgtctctacggcgagtgccgcgagcaggac
tgcgtgtacaagcacaccaatgaagatatcaaggagtgtaacatgtacaggttgggcttt
tgtccaaatggtcctgactgtcgttacaggcatgcaaaactgcctggacctccacctcct
gtagaagaggtccttcagaagattcagcatttaaattcttacaactacaactcttctaac
agatttttccaacaaaggaatggtaatttccctcaacaagcagaaaagtctcagtttcca
cacggtcccaacactgccaatcaaggcgtggttaaaccttcaacaaatgagtcttctaat
gtccagcagcagcaacagtccaagcagcaggtcagccagaatcagacaccaaatattcca
aatggcctgctcaatcaaacgaacagaactgctatacctttgcctcaaggaatatctagg
tattttattgttaaaagttgcaaccgtgaaaatttggaattatctgtacaacaaggagta
tgggcaactcaaaggagcaatgaagctaaactgaatgaagcttttgactctgctgaaaat
gtgattttgattttttctgtcaaccggactcggcatttccagggttgtgcaaagatgaca
tcaagaattggtggatctgttggtgggggcaattggaaatatgcacatggaactgcacat
tatgggcggaatttttcagtgaaatggttaaagttatgtgaattgtccttccacaacact
cgccatctgcggaatccgttcaatgagaacttaccagtcaagataagtagagactgtcag
gagctagagccttctgttggtgagcagttagcttccttgctttatcttgaaccggatagt
gaacttatggaaatttcacttgcagctgaatcaaaacgagaggaggagaaagcaaaggga
gtcgatccagacaacagaggagagaatccagatattgtcccattcgaggacaatgaagag
gaggaagaggaagaaagcgaagaagaggaggagagcttcagccagattcctggggcagca
atgcagggtagagggaggggcaggggaatcatgtggccccctcacatgccgctagcacgt
ggagccagacctatgcctgggacacagggttttccccctgttataatgggtgctgatggg
ttatcttatggacctattacacctgatgggtttccaatgcctgatctttttggggttggc
ccccgtccttttgcaccgtatggtccaagattttccggtgattttaccggtcccaactct
ggcatgatgttccgtgcgcgaccttctcaacctttcccagcgggtggatttgggatgatg
atggggccagggcgtgccccctttatgggagtgatgggggttgcaggtgcacatccaact
cggcctggccggccagttggcatgcctcaaatgtttccaccacccccaccaccatcctct
caaaatatcaaccgggttatgaagagagatcagagggtgaatgatcggaatgacaggtat
aatgcagcttcagagcaaggcaagggtcaagagatgcctagtcctggtgttggaccagat
gatgagacacggtttcagcatggattcaaggctcaccatgaagatcattatggtggcggt
aataactttaaaaatgatgagagcgaaagtgaggatgaggcacctaggcggtcaaggcat
ggggaggggaggaagaagcggcgaggctcagaaggagatactaccacaggctccgatcac
ttacagatgccatga
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