Juglans regia (English walnut): 108996612
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Entry
108996612 CDS
T05245
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108996612
Transcription machinery [BR:
jre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
108996612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_36
Motif
Other DBs
NCBI-GeneID:
108996612
NCBI-ProteinID:
XP_018828144
UniProt:
A0A2I4F921
A0A833UEI8
LinkDB
All DBs
Position
13:31953988..31960084
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AA seq
509 aa
AA seq
DB search
MMAAAAVIGLSSGKRLLSCSYYYSDLAEKIPYANDHAGAHYQITSSKKVISAKKSANFTP
GFQSAIQQTQSIKAVKEHVDIVSSPSTAEPWFQRSNELEEESSDLHYSMEALLLLQKSML
EKQWNLSFEPKVLTDSPTGKNHRKIPVTCSGVSARQRRVNTRNKILNKNGYLMQPSSGKQ
LGSMISPELLQSHSKGYVKGVVSEELLTHADVVCLSKKISAGLSLEEHKLRLKERLGCEP
SDDQLATSLRIPLAQLRSKFIECSLAREKLAMSNVRLVMSIAQRYENMGAEMSDLVQGGL
IGLLRGIEKFDSSKGCRISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKVR
LQEKGINPSIDRIAECLNMSKKKVRNATQAMSKVISLDREAFPSLNGLPGETHHSYIADN
RPENNPWHGVDEWALKDEVNKLINMTLGEREREIIRLYHGLDNECLTWEDISKRIGLSRE
RVRQVGLVAFEKLKHAARKSKLEAMLVTH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatggccgcggctgcagtaattgggcttagttcagggaagaggctcttgagttgctcc
tactattactcagatctcgcggaaaagatcccgtatgccaatgatcatgcaggagcgcac
tatcaaataacttcatccaagaaagtgataagtgcaaaaaagtcagctaattttactccc
ggttttcagtcagctattcaacaaacacagtctatcaaggctgtcaaagaacatgtggat
attgtttcctctccttcaactgcagagccatggtttcagagatccaatgaacttgaagag
gaaagttctgatcttcattattcaatggaggcacttcttttgctgcaaaagtctatgctg
gaaaagcaatggaatctttctttcgagccaaaggtactaactgactcaccaacaggaaaa
aatcataggaagatacctgtcacttgttctggggtatctgctcggcaaaggagagtgaat
actaggaataaaattctgaacaaaaatggttatctgatgcaaccttctagcggtaagcag
ttgggatccatgatcagtccagagctgcttcagagccattcaaagggttatgtcaagggt
gtagtaagtgaagaattgcttactcatgcagatgtagtatgcctgtcaaagaaaattagt
gctggtctttccttagaggagcacaagttgagattgaaggagaggttaggatgtgagcca
tctgatgaccaacttgcaacttctttgaggattcctctcgcgcaattacggtcaaaattc
attgagtgttctttagcaagggagaagttggcaatgagcaacgttcgtctggtcatgtct
attgctcaaagatatgaaaacatgggtgctgaaatgtctgaccttgttcagggtggtctg
attggattgctgcgtggaattgagaaatttgattcttcaaaagggtgcagaatttcaacc
tatgtttattggtggatacgtcagggtgtttcacgaacattggttgagaattccaggact
ttgagattacctacccatttgcatgaaaggttaggtttaatccggaatgcaaaagttaga
ctgcaagagaaaggaataaatccatcaattgataggattgcagaatgcctgaacatgtca
aaaaagaaagtcaggaatgctacacaggcaatgagtaaggtcatctctcttgacagggaa
gcatttccctctctgaatggtcttccaggagaaacgcatcatagttacattgcagataat
cgccccgagaataacccatggcatggagtagacgagtgggcactaaaggatgaagtaaac
aagctcattaatatgacacttggggaacgggagagagagattatacgtctttaccatggt
ctggataatgaatgtcttacatgggaggatattagtaaacgcataggtttgtccagagaa
agggtaaggcaagtcggacttgttgcatttgaaaaactaaaacacgccgcgaggaaaagc
aagttggaggctatgctggtgacacattag
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