Juglans regia (English walnut): 108997084
Help
Entry
108997084 CDS
T05245
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X2
KO
K14327
regulator of nonsense transcripts 2
Organism
jre
Juglans regia (English walnut)
Pathway
jre03013
Nucleocytoplasmic transport
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108997084
03015 mRNA surveillance pathway
108997084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108997084
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108997084
mRNA cycle factors
P-body specific factors
108997084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
108997084
NCBI-ProteinID:
XP_018828741
UniProt:
A0A2I4FAR4
LinkDB
All DBs
Position
7:complement(49555593..49569449)
Genome browser
AA seq
1195 aa
AA seq
DB search
MDHHEDECRARAENHSKQDDEEAVAHLEEIKKSMEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRSVNLSKFVSEAVTAICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLSELYFVGVIED
SGIFMNIIKDLTSLEHLKDRDTTQTNLTLLASFARQGRIFLGLPLSGQEIHEEFFKGLNV
TADQKKFFRKAFHTYYEAAAELLQSEHASLNQMEHENAKILSARGELNDENAASYEKLRK
SYDILYRNVSSLAEALDMQPPAMPEDGHTTRVTTGEGASPPASGKDSSVLEAIWDDEDTR
AFYECLPDLRAFVPAVLLGEADPKANEPSMKMQEQHTEPTPESDQDQQATQDAAEVSSDS
GALQEGKSIDKGKDKEEKDKEKIKDSDKEKGKEKDADKKGENEKEKLKGLEGTNLEALLQ
RLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRGLFNVPRTSLELLPYYSRMVATLSTCMK
DVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDD
FTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYL
CKPPERSARVAKVRPPLHQYIRKLLFSDLDKTTIEHVLRQLRKLPWSDCEPYLLKCFMKV
YKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRVGLELNDYGMQQRRIAHMRFLG
ELYNYEHVDSSVIFDTLYLILVFGHGTPEQDSLDPPEDCFRIRMITTLLETCGHYFDRGS
SKRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSVEEANAAVIELEEH
EHSVSADKANSEKYSDSENPSSRTTSNANSVNGKSIGNGTEENGRVHEDIGDSDSDSGSG
SIDPEGHEEEELDEEHPDDGSDSEDEDDDDGVGPASDEDEVHVRQKVTEVDPQEEANFMQ
ELKAVVQESMEQRRQELRGRPALNMMIPMNVFEGSTKDHHGRGGVVGESGDEALDEEAGG
SKEVQVKVLVKRGNKQQTKQMYIPRDSSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEE
ELNGLGTQTMNWSHGAGNRGSSRGNTWDGTGTRASGSRHRHHNYSGSGLYYSRKK
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggatgaatgccgtgctcgagctgaaaatcatagcaagcaagatgat
gaggaagctgttgcccatcttgaggaaattaagaaatcaatggaggcaaaaatggctctt
cgtcaaagcaatttgaatcctgaaaggcctgattcaggatttcttaggacattggactcc
agcattaaacgtaatacggcagttattaaaaagctaaaacagataaatgaagagcagcgt
gaaggtctgatggaagagttgcggagtgtcaacctaagcaaatttgtcagcgaagctgtt
acagctatttgcgatgccaagcttagaacatcagatatacaagcagcggtgcagatctgc
tctttgcttcatcaaaggtacaaagatttctcaccaagcctgattcaaggactattgaag
gtattttttcctggaaagtctggggatgatttggatgcagacaggaacttgaaggccatg
aaaaagcgcagcacactgaaactcctttcggaactttactttgttggagttatagaagac
agtggcattttcatgaatatcattaaggatctcactagcttagaacatttaaaggacagg
gatactactcagacaaatttgacccttcttgctagttttgctcgacaaggaagaattttc
ctgggacttccactctctggacaagagattcatgaagagtttttcaagggccttaacgtc
acagcagatcaaaagaagttcttcaggaaggcattccatacatattatgaagctgcagct
gaactacttcagtctgagcatgcttccctcaatcaaatggagcatgaaaatgctaagatc
ctcagtgctagaggagagctcaatgatgaaaatgccgcttcatatgaaaagctacgaaaa
tcttatgatattttgtaccgcaatgtctcatctttagcagaagcacttgatatgcagcct
ccagcaatgccagaggatggtcacacaactagggttactactggggagggtgcttcacct
cctgcttctgggaaagattcttctgttctagaagctatatgggatgatgaagataccagg
gctttctatgaatgcttacctgatcttagagcatttgtaccagcagtattattgggagaa
gcagatcccaaagcgaatgagccatccatgaagatgcaggagcaacatactgaaccgaca
cctgaatcagaccaagatcaacaagccacccaagatgcagcagaagtttcttcagactct
ggtgctttgcaggagggaaaaagcatagacaaaggaaaggacaaggaggaaaaagataaa
gaaaagattaaagattcggacaaagagaaaggaaaagaaaaggatgcagataaaaaggga
gaaaatgaaaaggagaaactaaaaggtcttgaaggcacaaatttggaggctttattacag
aggctcccaggttgcgtgagccgtgatcttatcgatcaactgactgtggaattttgttat
ttaaattcaaagtcaaatcggaaaaaacttgtaagggggttgtttaatgtcccacggaca
tctctggaacttctaccgtactactcacgcatggttgccacactgtcaacttgtatgaag
gatgtctcttccatgcttttacagatgttggaggaggaatttaactttttaattaataaa
aaggatcaaatgaacatcgaaacaaaaataaggaatattaggtttattggagaactctgc
aagtttaaaattgcacctgctggccttgtttttagctgtttgaaggcttgtctagatgat
ttcactcaccacaacattgatgttgcttgcaatcttcttgagacatgtggccgttttctc
tatcggtcacctgaaactacaatacggatggctaacatgttggaaatattgatgcgcttg
aaaaatgtcaaaaatctggatcctcgccatagcactcttgtagaaaatgcttactacctt
tgcaaaccacctgaaagatctgcacgagtcgcaaaagttcgtcctccattacatcagtat
attaggaaattactattttcagatcttgataagaccaccattgagcatgtcctgaggcaa
cttcgcaaattgccatggagtgattgtgagccataccttttaaaatgctttatgaaggtt
tacaaggggaagtatggtcagattcacttaattgcttctctcactgctggtttgagtcgc
tatcatgatgaatttgctgtggctgttgttgatgaggttttggaggagattagggtgggg
ctagaattaaatgactatgggatgcaacaaagacgcattgcccacatgcgattcttaggg
gagctatacaattatgagcatgtagattcatctgttatttttgacacactttatttgatt
cttgtcttcggccatggcactccagagcaagattcactagatccaccagaagattgtttc
cgcatcaggatgattactactcttctcgaaacctgtgggcactactttgacagaggctct
tccaagaggaaacttgatagattcttagtacatttccagaggtatattctcagcaaaggt
gcactgcctctggacattgaatttgacttacaggacttatttgctgaactaaggcctaac
atgactagatactcttccgttgaggaagcgaatgcagctgtaatagaacttgaggagcat
gaacatagtgtttctgctgacaaggccaatagcgagaagtactctgactcagaaaatcct
tcaagcaggactacttccaatgccaactcagtgaatggaaagagcattgggaatggcacc
gaggaaaatggtagagtgcatgaagacattggggacagtgatagtgattcggggagtggc
agtatagatcctgaaggacatgaagaggaagagttggatgaggagcatcctgatgatggc
tctgatagtgaagatgaggatgatgatgacggggttggacctgcttctgatgaagatgaa
gttcacgttaggcagaaagtcacagaggtggacccacaggaagaagccaattttatgcag
gagcttaaggctgtagtgcaggagagcatggaacagcgacgtcaagagttgcgaggtcga
cctgcattgaatatgatgataccaatgaatgtgtttgaggggtccacgaaggatcatcat
ggaagggggggtgttgtcggggagagtggtgatgaggcattagatgaggaggccggagga
agcaaggaggttcaggtgaaagttcttgtgaagcgtggtaacaagcaacaaacgaagcag
atgtacatccctcgggatagttcactcgtgcagagcacaaaacagaaagaagcagctgag
cttgaagagaaacaagacatcaaaaggctggtactggagtataatgacagagaagaagaa
gagcttaatggattgggtacccaaacaatgaactggtcacatggtgcgggcaacagaggt
tccagccgcggcaacacttgggatggaactggtactagggctagtggatcacgtcatcgg
catcataattactcaggcagtggactctattacagcagaaaaaagtga
DBGET
integrated database retrieval system
