Juglans regia (English walnut): 108997443
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Entry
108997443 CDS
T05245
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03022
Basal transcription factors
jre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108997443
09124 Replication and repair
03420 Nucleotide excision repair
108997443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
108997443
03400 DNA repair and recombination proteins [BR:
jre03400
]
108997443
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108997443
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108997443
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108997443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
108997443
NCBI-ProteinID:
XP_018829282
UniProt:
A0A833X582
A0A2I4FCA6
LinkDB
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Position
9:complement(19851824..19858771)
Genome browser
AA seq
767 aa
AA seq
DB search
MGHGEKGRPAKKHKSSAKEGHRKITEVEDAFFGEEVDEDRDAEREGKKRDFSKLELKPDH
ANRPLWACADGRIFLETFSTLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGL
ATETIIAVLSKLSKTKLPKEMVDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKKLLKD
EVISRARINSEGSNGSDGFTISKSIGEIGTGHEDLLNGAEVSTAVEQKETHAFEIDPSQV
ENVKQRCLPNALNYPMLEEYDFRNDTVNPDLNMDLKPEAQPRPYQEKSLTKMFGNGRARS
GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSSIGDDQICRFTSD
SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
ISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
MKLRKPMIYGATSHVERTKILGAFKTSKEVNTIFLSKVGDNSIDIPEANVIIQISSHAGS
RRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYS
FKVITSLPPPDTGADLSYHSLDEQLALLGKVLSAGDDAVGLEQLEEDADDIALHKGRRLM
GSMSAMSGANGMVYMEYSTGQKHRQGQLKNKPKDPARRHHLFKKRFT
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggacacggtgaaaaaggccgacccgccaaaaagcacaaatcatcggcgaaggaaggt
cacaggaaaattaccgaggtcgaagacgccttttttggcgaagaagtcgacgaggatcgt
gatgccgagagagaagggaagaagagagattttagcaaattagagctgaagccggatcat
gctaataggcctttgtgggcttgcgccgatggccgcattttcctcgaaaccttctcgact
ttgtataaacaagcttacgattttcttatcgctatcgccgaacccgtttgccggccggag
tcgatgcacgagtacaacctgaccccgcactcgctgtatgctgcggtgtctgttggtctt
gcaacggaaacaattatagctgttttgagtaaactatcaaagaccaagctgcctaaggaa
atggttgatttcatacatgcttccacggccaattatggcaaagtaaagcttgtgcttaag
aagaatcggtactttgtcgaatccccatttccggaggtcttgaagaagttgctcaaggat
gaagttatttcccgggcaaggattaattctgagggctcaaatggaagtgatggatttaca
attagcaaatcaattggtgaaattggaactggtcatgaggatttacttaatggagcagaa
gtgtcgactgcagtggaacaaaaagaaactcatgcatttgaaattgacccttctcaggtt
gagaatgtaaagcaacgttgcttgccaaatgctttaaattaccccatgttggaggagtac
gacttcagaaatgataccgtcaaccctgacctcaacatggacctgaagcctgaagcacaa
ccacggccatatcaggaaaagagtcttactaaaatgtttggaaatggtagagctagatct
ggaattattgtactaccttgcggtgctggaaagtctctagtgggtgtctctgcagcctgc
cgaataaaaaaaagctgtctttgcttagcaacaaatgctgtttcggtggatcaatgggct
tttcagttcaaactgtggtcatccatcggtgatgatcaaatttgtcgtttcacatctgat
agcaaagaaagatttcgtggcaatgctggggtggttgtgacgacatataacatggttgct
tttggtggtaaacggtctgaagaatctgaaaagattattgaagaaataagaaatagagaa
tggggattgcttctcatggatgaggtgcatgtggttcctgctcacatgtttcgaaaggtc
atcagcatcactaaatcccactgtaaacttggactcactgccacgcttgtgagagaggat
gaaaggattacagatctaaacttccttatcggtcccaaattgtatgaagcaaactggttg
gatctagtgaaaggtggatttatagcaaatgtacagtgtgctgaagtatggtgtccaatg
acaaaggagttttttgctgaatatttgaagaaagaaaactccaaaaaaaagcaggcactt
tatgtgatgaacccaaataagtttagggcatgcgagtttctcataaggtttcatgaacag
caacgtggtgataagataattgtctttgctgacaatctttttgcactcacggagtatgcg
atgaaactacgcaaacctatgatctatggtgctacaagccatgttgagaggacaaaaatt
cttggagctttcaaaactagcaaggaagtaaacactattttcctgtccaaggtgggtgat
aattcgatagatattcctgaggcaaatgttataattcagatttcttcacatgctggttca
agacgtcaagaagcccaacgtctgggccgtattctcagggccaagggtaaacttcaggac
aggatggcaggaggtaaagaggagtataatgcatttttctattcccttgtgtcaacagat
acacaggagatgtactactcaagtaaaaggcaacagtttttgattgatcaaggttatagc
tttaaggtaataacaagcttgcctccacctgatactggagctgatttaagttaccacagt
ctagatgaacaattggcacttctcggaaaggtgttgagtgcgggtgatgatgcggtcggt
ttggagcaattagaagaagatgcagatgacatagcgcttcataagggccgtcgattaatg
ggatccatgagtgctatgtcaggtgcaaatgggatggtttatatggaatacagtaccggg
caaaaacatcggcaaggccagctcaagaataaacccaaagatcctgcgaggcgacatcat
ctgttcaagaaacgctttacttaa
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