Juglans regia (English walnut): 108998594
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Entry
108998594 CDS
T05245
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108998594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
108998594
Spliceosome [BR:
jre03041
]
Common components
Common spliceosomal components
SR proteins
108998594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RNA_bind
Nup35_RRM_2
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
108998594
NCBI-ProteinID:
XP_018830721
UniProt:
A0A2I4FGE3
LinkDB
All DBs
Position
1:9011101..9015820
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AA seq
433 aa
AA seq
DB search
MLSSHDRLCFSVNPKIILVIFSPLGFWRTILNFFRLFSGHCLRKEKMRPIFCGNFEYDAR
PSDLERLFSRYGKVERVDMKSGFAFIYMEDERDADDAIRRLDRTEFGRKGRRLRVEWTKH
ERGIRRPGGSKRSSASTKPSKTLFVINFDTHYTRTRDLEKHFEPYGKLVSVRIRRNFAFV
QYESQDDATKALDATNMSKLLDRVISVEYAVRDDDDERRNGHSPDRFHDRSLDRGRDRRR
SPSPYRRERGSPDYGRGSSPSRKERGSPDYGRDRSPSPYRRERGSPEYGRARSRSPQRER
VGRDHRHSSSHSPYQTERVSADVGHGAGHSPYARERASADHGRGPSRSPYGRAGASPDNG
RDPSRSPYGRERASPENGHGPSRSPYGREKANPDSIHEVSPIPEPREDSPNYGGGPDTPV
HERYQSRSPPTEE
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgctttcatcacacgataggctttgcttttcggtcaatccaaaaataattctcgtaatc
ttctctcctttagggttttggagaacaattctcaatttcttccgacttttttccggtcac
tgccttcgaaaggaaaaaatgaggccaatcttctgtgggaattttgagtatgacgctcga
ccgtctgatctggaacggcttttcagtagatatgggaaggttgagagggtggatatgaag
tctggatttgcttttatttatatggaggacgagagagatgctgatgatgctattcggaga
cttgaccgaacagaatttggtcgaaagggacgcaggcttcgtgttgaatggacaaaacat
gaacgtggcattagaaggcctggaggttccaaaagatcttcagctagtacgaaaccttca
aagactttgtttgttattaattttgatacacactatacaaggactagggacttggagaag
cactttgaaccatatggaaagttagtgagtgtgaggattagaaggaactttgcatttgtg
cagtatgaatcacaggatgatgccacaaaagcattggatgcgacaaacatgagcaaattg
ctggatcgagttatatcagtggaatatgcagtccgggatgatgatgatgaacggagaaat
gggcatagccctgatagatttcatgataggtcattggatagaggtcgtgatagaaggcga
tcccctagcccatatcgaagagagaggggtagccctgattatggacgtggctctagtccc
tctaggaaagagagaggcagccctgattatgggcgtgatcgcagtccaagtccctatcga
agagagaggggtagtcctgagtatggtcgtgcacgcagtcgtagtcctcaaagagagagg
gttggccgtgatcatcgccacagttccagccatagtccctaccaaacagaaagggtgagt
gctgatgttggtcatggcgccggtcacagtccttatgcaagagagagggcaagtgctgac
catggtcgaggccctagtcgcagcccttatggaagagcgggggcaagccctgacaatggt
cgtgaccccagccgcagtccttatgggagagagagggctagtcctgaaaatggtcatggc
cccagccgtagtccgtatggaagagagaaggctaaccctgacagtattcatgaagtcagc
ccaatacctgaacctagagaggacagccccaattatggtggtggtccagatacccctgtg
catgagagatatcaaagtcgatcaccaccaacagaggagtga
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