Juglans regia (English walnut): 108998624
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Entry
108998624 CDS
T05245
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108998624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108998624
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108998624
U7-dependent histone pre-mRNA processing factors
108998624
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
CbiG-like_linker
Motif
Other DBs
NCBI-GeneID:
108998624
NCBI-ProteinID:
XP_018830772
UniProt:
A0A2I4FGL1
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Position
1:9690045..9701951
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AA seq
740 aa
AA seq
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MGTSVQVTPVCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDPSLLQPLSKIASTIDAVLL
SYPDTLHLGALPYAMKQLELSAPVYSTEPVYRLGLLTMYDQYLARKQVSEFDLFTLDDID
SAFQMVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDLNHRKE
RHLNGTVLASFVRPAVLITDAYNALNNQPYRRGEKENEFGETIKKTLGAGGNVLLPVDTA
GRVLELILILEQYWADKSMNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEQNRENPF
HLKHVTLLINKTELDNAPDGPKVVIASMASLEVGFSHDIFVEWASDTKNLVLFTDRGQFA
TLARILQADPPPKAVKVIMSKRVPLVGEELIAYEEEQNRIKKEETLKAALIKEESKASHG
ADVNVSDPMVIDVSKAHSSPDVAAPHGGKYRDILTDGFVPSSTSVAPMFPFYENASEWDD
FGEVINPDDYVIKDEDMDQAGMHVGGNADGKFDDGSASLILDAKPSKVVSNELTVQVKCS
LIYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPHIEET
IDVTSDLCAYKVQLSERLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPCSKAAPTHR
SVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKIGDASQKGGASGPQQILIEG
PLCEDYYKIRDYLCSQFFLL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttcggtgcaggtgactccggtgtgcggagtgtacaacgagaacccgctgtcg
tacttagtttccatagacggtttcaacttcctcatcgactgtggttggaacgacctcttc
gacccctctctccttcaacccctctccaaaatagcatcaacaatagatgccgtcttgctt
tcatatccggatacacttcaccttggtgccttgccgtatgccatgaaacagcttgaactc
tccgctccggtttattctactgagcctgtttacagattgggcctcctcacaatgtacgat
cagtatctcgcgcggaagcaagtgtcggagtttgatctgtttactttagatgatattgat
tctgccttccaaatggtgaccagactaacctactctcagaatcatcatctctctggcaaa
ggggaagggattgtgattgcaccccatgtggctgggcatctgttgggaggtactgtatgg
aagatcacaaaggatggtgaagatgttatatatgctgttgacttaaaccatcgcaaagaa
aggcatttgaatggaactgttctagcatcttttgtgcggcctgccgttctaataacagat
gcctataatgctctaaacaatcagccatatagacgtggtgaaaaggagaatgagtttgga
gaaactataaagaaaacactaggtgctggtggaaacgtattactaccggttgatactgct
gggagagtcttggaacttattctaatattagaacagtattgggcggataaaagtatgaac
tatcccatattctttcttacatatgttgcgtctagcacaatcgattatgtcaagagtttc
cttgagtggatgagtgattcgattgcaaaatcttttgaacaaaatcgtgaaaatcccttt
catctaaagcatgtcacacttttaattaacaagactgaacttgataatgctccagatggt
ccaaaggttgttattgcatccatggccagtttggaagtgggtttttctcatgatattttt
gttgaatgggcgtctgataccaagaatcttgtgctctttactgacagaggccagtttgcc
acattagctcgtatactccaggcagatccacctccaaaagctgttaaagtcatcatgtcc
aagagggttcctttggttggagaggagctaattgcttatgaagaagagcagaaccgaata
aaaaaggaagaaacattaaaagctgctctcatcaaggaggagtcaaaagcatctcatggg
gctgatgttaatgtgagcgatccaatggtcattgatgttagtaaagctcattcttcgcca
gatgtggctgctccacatggcggtaaataccgggacatattaactgatggatttgttcct
tcatccaccagtgttgccccaatgtttcctttttatgaaaatgcttcagagtgggatgat
tttggcgaagtcataaaccctgatgattatgttatcaaggacgaagacatggaccaagca
ggaatgcacgtaggtggcaatgcagatggaaaatttgatgatggatctgccagtttgata
cttgatgcaaaaccttcaaaagtcgtttctaatgaattaacagtgcaagtgaagtgttca
ttgatttacatggactttgagggccgttccgatgggcgttctattaaatcaattctctcc
catgtggctcccctaaagctagttctggtgcatggatcggccgaggccactgagcatttg
aagcaacactgcttgaaacacgtttgccctcatgtttatgctccccatattgaggaaaca
attgatgtcacctctgatttgtgtgcttacaaggtacaactttctgagaggctgatgagt
aatgtgctctttaagaagctcggagattatgaaatagcttgggttgatgctgaagtaggg
aagacagagaacggcatgctgtctttacttccgtgttcaaaggcagcaccaacacataga
tccgttcttgttggtgatctaaaaatggcagattttaagcagtttctagccagtaagggc
atccaggttgaatttgctggtggggctttacggtgtggcgagtacgtgaccctacgcaag
attggggatgcgagccagaaaggtggcgcttctggtcctcagcaaattctcattgaaggc
cctttgtgtgaggattactacaagatccgggactatctgtgttcacagttttttttgctt
taa
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