KEGG   Juglans regia (English walnut): 108999340
Entry
108999340         CDS       T05245                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A-like isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
jre  Juglans regia (English walnut)
Pathway
jre03020  RNA polymerase
jre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108999340
  09124 Replication and repair
   03420 Nucleotide excision repair
    108999340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    108999340
   03400 DNA repair and recombination proteins [BR:jre03400]
    108999340
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     108999340
  RNA polymerase III system
   RNA polymerase III
     108999340
  RNA polymerase I system
   RNA polymerase I
     108999340
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108999340
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N
Other DBs
NCBI-GeneID: 108999340
NCBI-ProteinID: XP_018831770
UniProt: A0A2I4FJE3 A0A834D1T8
LinkDB
Position
4:31248059..31252027
AA seq 234 aa
MEMEEQDGFEGEEEGNGGILGPCLTSYVDPGTSESHRYYLARRTVLEMLRDRGYVVPNSE
VELSLQDFRDLHGQNPDLERLRISTTLRSDPLKRILVIFCGPSVVKVHVIRSIAYQIVNK
DTLGGLILIVQNHITAQALKAVDLFPFKAEIFQITDMLINITKHVLKPKHRILTDREKQR
LLEKYNIEEKQLPRMLRKDAIARYYGLEKGQVVKVSYGGENEITESHVTYRCVW
NT seq 705 nt   +upstreamnt  +downstreamnt
atggagatggaggagcaggatgggtttgaaggggaagaggaggggaatggtgggatactg
gggccgtgcctgactagctacgtggaccctggaacctctgagagtcacagatactacctc
gcacgcagaaccgtcctggagatgctcagggacagaggctatgtcgtccccaactccgaa
gtcgagctctctctccaagacttccgggaccttcatggccagaaccccgacctcgaacgc
ctccgaatctccaccactcttcgctctgaccctttgaaaaggattttggtaattttttgt
ggacccagtgtggtaaaagttcatgtgattcgtagcattgcataccagatcgttaacaaa
gacactttgggtgggttgatactaatagtgcaaaaccatataacagcccaagcattgaaa
gcagtggatcttttcccatttaaagctgaaatattccagatcaccgacatgcttattaac
attacaaagcatgtgttgaagccaaagcatcgcatactaaccgaccgagagaaacagagg
ctcttagaaaagtacaatatagaagaaaagcagcttcctcgaatgttacgaaaagatgcg
attgcaagatactacgggcttgagaaggggcaggtggtgaaggtaagctatggtggtgaa
aatgaaatcaccgagtcgcatgtaacttaccgatgtgtctggtga

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