KEGG   Juglans regia (English walnut): 108999534
Entry
108999534         CDS       T05245                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
jre  Juglans regia (English walnut)
Pathway
jre03013  Nucleocytoplasmic transport
jre03015  mRNA surveillance pathway
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108999534
  09122 Translation
   03013 Nucleocytoplasmic transport
    108999534
   03015 mRNA surveillance pathway
    108999534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    108999534
   03041 Spliceosome [BR:jre03041]
    108999534
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108999534
    TREX complex
     108999534
Spliceosome [BR:jre03041]
 Complex C
  Other components
   EJC/TREX
    108999534
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108999534
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 108999534
NCBI-ProteinID: XP_018831985
UniProt: A0A2I4FK07 A0A833WK76
LinkDB
Position
12:29958239..29960746
AA seq 239 aa
MSNKLDMSLDDVIMNSRRSGGYNGNSRGRGRASGLGPDRRFANRTVPRMAPYYTPQPMQV
VDSIFQHQMVLGGGSNTEEGTKLYISNLDYDVSGEDLQVLFSEVGDLKRYFIHYDRSGRS
KGTAEVVFLRQLDAVAAIKRYNNVELDGKPMKIELVGVSLVTPAIVPPSTSSILGNPIGT
FRSGQGRAGHGGWVRGGGSGFGHGPARGSTQGKGHVEKLTAEDLDADLEKYRLETLQTN
NT seq 720 nt   +upstreamnt  +downstreamnt
atgtccaataaactggacatgtctctcgacgacgtgatcatgaacagtcggagatccgga
ggctacaatggtaattccaggggccgaggccgcgcctccggtctcggtccagaccgtagg
ttcgcgaaccgcaccgtgcctagaatggcgccgtactacactccgcagccaatgcaagtg
gtggattccatttttcagcatcaaatggtgttgggtggaggctcaaacacagaggaaggc
accaaactatatatatcaaacttagattacgatgtttctggcgaagatcttcaggtcctt
ttctctgaggttggtgacttgaaaagatatttcattcattatgataggagtggaaggtca
aagggaacagctgaagttgtctttttacgacagttggatgctgtggcagccattaagaga
tacaacaatgttgaacttgatgggaagccaatgaaaattgagctggtaggggtgagtttg
gttacgcctgccattgtacctcctagtacaagtagcatcttaggaaatccaattggcacc
ttcagaagtggacaagggcgggctggacatgggggctgggttcgaggtggtggtagtggc
tttggccatggacctgcaaggggaagtacacaggggaaaggtcatgttgagaagttaact
gcggaagatcttgatgctgacttggagaaataccgccttgaaactctgcaaacgaactga

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