Juglans regia (English walnut): 109000391
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Entry
109000391 CDS
T05245
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X4
KO
K14408
cleavage stimulation factor subunit 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109000391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109000391
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109000391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
TPR_CcmH_CycH
TPR_16
Iml2-TPR_39
DUF1993
TPR_9
Motif
Other DBs
NCBI-GeneID:
109000391
NCBI-ProteinID:
XP_018832788
UniProt:
A0A2I4FMD1
A0A833TPY8
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Position
15:complement(619786..636458)
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AA seq
775 aa
AA seq
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MSSTVDKTMGDSKAMDDKYNVEAAEVLANEAQHLPITEAAPIYEQLLTLFPTAAKYWKQY
VEAHMAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIKMANESKGLEGQEETRKAFDFML
NYVGADIASGPIWMEYITFLKSLPALSTQEESQRMTAVRKVYQKAIVTPTHHIEQLWRDY
ENFENSVSRQLAKGLLSEYQPKFNSARAVYRERKKYVDEIDWNMLAVPPSGSYKEEVQWM
GWKRLLAFEKGNPQRIDSASSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKSGSVDTAV
KVFQRALKALPDSEMLRYAYAELEESRGAIQPAKKIYESLLGDDVNTTTLAHIQFIRFLR
RTEGVEAARKYFLDARKSPNCTYHVYVAYAMMAFCLDKDREIAHNVFEAGLKRFMHEPLY
ILEYADFLTRLNDDRNIRALFERALSSLPPEESVEVWKRFAQFEQTYGDLASMLKVEQRR
KEALSRTGEEGASALVGSLQDVVSRYSFMDLWPCSSKDLDHLARQEWLAKNMNKKVEKLA
LPNGPGSVDKDYTGLISNSTVSAKVVNPDVSKMVIYDPRQKSGIETLPSTTSSGVPAAYS
NLSNPVAAIVGGGMTNAFDEILKATPPALVAFLASLPVVEGPTPDVDVVLSICLQSDIPA
GQTGKLGTSSVQLSGGPAPTTSVLSGSKSHPIPSAASFKTTRDRQAGKRKDLDRQEDDET
ATVQSQPLPRDVFRMRQIQKSRGGTTTKARGVTTSQTGSASYGSALSGDLSGSTG
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaccgtggataaaacaatgggcgacagtaaagccatggatgataaatacaat
gtcgaagccgcagaagttctagccaatgaggcgcagcatttgcccattacagaggctgca
ccgatatacgagcaactgcttacactttttccaacagccgcaaaatattggaagcagtat
gttgaggcacacatggctgtaaataatgatgatgctaccaaacagatatttagccgttgc
ttactaaactgtcttcaaatacctctttggcggtgctacattcgtttcattaaaatggcc
aatgagtccaaggggttagagggtcaagaagagactagaaaagcttttgattttatgctc
aactatgttggagcagacatagcatctgggcctatttggatggagtacatcaccttctta
aagtcgttgccggctctaagcactcaggaagagtcacaaagaatgactgctgtcaggaaa
gtgtaccaaaaagctattgttactcctactcatcacattgaacaactttggagggactac
gagaactttgaaaactctgttagccgccaactggcaaaaggactgttatcagaatatcag
cccaagtttaacagtgcaagggctgtctacagggagcggaagaaatatgttgatgaaatt
gattggaatatgctggctgtaccaccatctggctcttacaaggaagaagtgcaatggatg
ggatggaaacggttgttagcttttgagaagggaaacccacagaggatagacagtgcatcc
tccaacaagcgaattatattcacatatgaacagtgtctgatgtatctgtaccattatcct
gatatctggtatgactatgcgacatggcatgcaaaaagtggttcagtagatactgcagtc
aaagtatttcagcgagctttgaaggctcttcctgactcagaaatgctaaggtatgcatat
gcagagctggaggaatctcgtggagcaattcagcctgcaaagaaaatatatgagagcctt
ttaggggatgatgttaacacaacgacgcttgcacatattcaatttattcgctttctaaga
aggactgagggtgttgaagcagctcgcaagtactttttagatgctcggaaatccccaaat
tgcacataccacgtttatgttgcttatgcaatgatggccttttgtcttgacaaggatcga
gagattgcacataatgttttcgaagcgggattgaaaaggtttatgcatgagcctttatac
attcttgaatatgcagattttttgacacgcttgaatgatgatagaaatatccgggcctta
ttcgagcgggcactgagttcgctcccaccagaggaatctgttgaggtttggaaacgattt
gcccaatttgagcaaacttacggagatctggcaagcatgttgaaggttgaacaaagaagg
aaagaagctctttctagaacaggggaagaaggagcatcagcattagtgggatcgttgcaa
gatgttgtctcacgttacagtttcatggatctttggccatgctcttctaaagatttggat
catttggcacggcaagagtggcttgccaaaaatatgaataagaaggttgagaagttggct
ctgcctaatggacctgggtctgtagataaagattatacgggcctgataagcaattcaact
gtgtctgcaaaggttgttaatcctgatgtttctaagatggtgatttatgacccaagacaa
aaatctgggatagagactcttccaagcacaacatcatctggagttcctgctgcatatagc
aacttatcaaatccagttgctgcaatagtgggtggtgggatgaccaatgcatttgatgaa
atactgaaagcaacaccacctgcattggtagcatttctagcaagcttgcctgttgttgag
ggcccaacaccggatgtggatgttgtattatctatttgcttgcagagtgatataccagca
gggcagactggcaagttaggcacttcctcagtgcaattgtcaggtggtcctgcccctact
acaagtgtcctctctggcagcaagtcccatcccatcccaagtgccgcatcttttaaaaca
actagggacagacaagcagggaaaaggaaagacctagacagacaagaggacgatgaaact
gccactgtccaaagccagccactacctagagatgttttcaggatgcggcagatccagaaa
tctcgaggaggtacgactacaaaagctcgaggagttaccacttcacaaacaggatcagct
tcatatggaagtgcactttctggagatttgtctggtagcactggctga
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