Juglans regia (English walnut): 109000409
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Entry
109000409 CDS
T05245
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109000409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109000409
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109000409
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109000409
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
109000409
NCBI-ProteinID:
XP_018832816
UniProt:
A0A2I4FME7
A0A834D136
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Position
3:101057..126325
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AA seq
888 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDGIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDNFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA
HIMKLELILRLLDNDELSPEQVNDVRDFLEDYVDRNQEDFDEFSDVDDLYNTLPLDKVES
LEDLVTIGPPSLVKQGAPVLSLKTSLVASASQIPVTVASNQQQSTVQEQVEDTVSQDSNS
DTVPRTPPPKNSVIGLSAATPVGSLATSNVSAHNLSGVSGSSTSLPGSGSVRAVPENIGP
VHFSSPLSLSSSAKEEDSVPGRRLSPSLSDTGLVRGIGRGGLSSQPSASISLSSSNVVPS
NGTIGAVPSTSEMAKRNVLGADDRLGSGMVQPLVSPLSNRMILPQVAKANDGTAAIDSSN
VVEPTTLAGRVFSPPIVPSMQWRPGSTFQNQNEAGQFRGRTEIAPDQREKFLQRLQQVQQ
QGPSTLLSMPPLAGASHKQFSANPLLQQLNSQSTSVSSQAGLGLGVQTPGLNNVTSAALQ
QQPNSILQQSNQQPLMSGGPKDADVGHAKVEEQQQQQNLPDDSTIDSTTGSGLGKNLMSE
DDLKADTPPGASDSLTEPVLVPRDIDLSPGQPLQSNQPSGSLGVIGRRSVSDLGAIGDNL
SGSTLNSGGMHDQSYNLKMLEAAYFKLPQPKDSERARSYTPRHPAITPPSYPQVQAPIVN
NPAFWERLGLEVNGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK
VATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELVA
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagccgtaagcttcagggagagatcgatcgggttctcaagaaggtccaagaa
ggcgttgatgttttcgacggtatctggaacaaggtttatgatacggacaatgcgaatcag
aaagagaagttcgaggcggacttgaagaaggagatcaagaagctccagaggtacagggac
caaatcaagacctggattcagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctggtggatgctcgtaaacttattgagcgtgaaatggaaagatttaagatc
tgtgaaaaggagactaagacaaaagcattctctaaagaaggactgggccagcaaccaaaa
actgacccaaaggagaaggctaaatcagagacaagggattggttgaacaacgtggttggg
gagttggagtctcagatagataactttgaagctgagattgaggggctatctgttaagaag
ggcaagactagacccccaagactgacacatttagagacctctattgcccggcacaaggct
catataatgaagttggaactgatcttgaggctgctggataatgatgaactgagtcccgag
caggttaatgacgttagagactttttggaagactatgtggaccgcaatcaggaggatttt
gatgaatttagtgatgttgatgacctttacaacacactaccattagacaaggtggagtct
cttgaagatttggttacgattggtcctcccagtcttgtgaagcagggggcacctgttctt
agcttgaagacgtctttggtggcatcagcatctcaaattcctgtcactgttgcttctaat
caacagcagagcactgttcaggaacaagttgaagatacagtttcccaggatagtaattcc
gatactgttcccagaactccacctcccaaaaatagtgtaattggtttgtctgctgccaca
ccagtcgggagtcttgcaacctcgaatgtttctgctcacaatttgtctggggtctccggt
tcttcaactagccttccaggttcaggttctgtgcgagctgtcccagagaacattggtcct
gttcatttttcctctcctttgagtctgtctagttctgcaaaggaagaagatagtgttcct
ggccgtagattgtctccatcactttctgatactggactcgtaaggggaattggtagaggt
ggcctctccagccaaccatcagctagcatctctcttagttctagcaatgtagttcctagc
aatggaactattggtgcagtcccttcaacctctgaaatggcaaagagaaacgtattagga
gctgatgacagacttggtagtggtatggtccagcctctggtttcccctctaagtaacaga
atgattttacctcaggttgccaaagcaaatgatggaactgctgcaatagattctagtaat
gttgttgagcctacaactttggctggcagagttttttcccctcctattgtccccagtatg
cagtggaggcctggaagtacttttcagaatcagaatgaagcgggacaatttcgggggaga
actgagattgctcctgatcagagggagaaatttttgcaacggctgcaacaagtacagcaa
caaggtcccagtacccttcttagtatgccgccccttgctggagcaagtcataagcagttt
tctgcaaacccactcttgcagcagcttaattctcaaagcacatctgtctcttctcaagct
ggtctgggacttggagtccagacaccgggtctcaataatgttacatctgctgccttacag
cagcagccaaattccatccttcaacagtctaatcaacaaccattgatgtcaggtggtcca
aaagatgctgatgttggtcatgcaaaagttgaggagcagcagcagcagcagaatttacct
gatgattcaactattgacagtaccactggttctgggcttggaaagaatctcatgagtgag
gatgatttgaaagccgatactcctccaggtgcatctgactctttgactgagcctgttcta
gtccctagagatattgatctctctcctgggcaacctttacaatcaaatcaaccttctggg
agccttggtgttattggccgaagaagtgtttctgaccttggtgctattggtgacaacctc
agcggatcaactctgaattctgggggaatgcatgatcagtcatacaatttgaagatgctt
gaggctgcatattttaaactccctcaacccaaggattctgaacgtgcaagaagttatact
ccgaggcatccagcaattactcctcctagctatcctcaagtacaggcgcctattgttaat
aatcctgccttctgggaaagactcggtctggaggttaatggcactgataccctgttcttt
gcattttactatcagcagaacacttatcaacaatatttggctgcaaaagagttgaagaag
caatcatggagataccacagaaaatacaacacatggtttcaaaggcacgaggagccaaaa
gtcgccacagatgaatttgaacaggggacatatgtatactttgattttcatattgccaat
gatgacctgcagcatggatggtgtcagaggatcaagacagaattcacttttgagtacaac
tatcttgaagatgaacttgttgcatag
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