Juglans regia (English walnut): 109000516
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Entry
109000516 CDS
T05245
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109000516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109000516
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109000516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_16
TPR_17
TPR_14
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_19
TPR_7
TPR_12
TPR_10
BTAD
NatA_aux_su
NTF2
Motif
Other DBs
NCBI-GeneID:
109000516
NCBI-ProteinID:
XP_018832964
UniProt:
A0A2I4FMS1
A0A833U5A0
LinkDB
All DBs
Position
8:8635365..8651068
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AA seq
1180 aa
AA seq
DB search
MGESEEESEEAVQRRLEESVNASPDDPSLHFELGLLLWEKEGESEKEKAAEHFVISAKLN
PQNAAAFRFLGHYYAHFSVDAKRALKCYQRAVSLNPDDSHSGESLCDLLDNEGKESLEVS
VCRDASEKSPKAFWAFRRLGYVQLHQNKWSEAVLCLQYAIRGYPTSADLWQALGLAYQRL
GRFTAAIKSYERAIELDNTNVFALVESGNIFLTLSSFKKGVEQFRQALEISPQSVSAQYG
LASGLLGLAKECVNLGAFRWGASLLEEASAVAIASTHLAGNISCIWKLHGDIQLAYAKCF
PWTQESQGLELDAEAFNTSILSWTRTCCLAAGSAKCSYQRALHLAPWQPNIYSDIAITAD
LILSLDKCSGSNLTAWKLSEKMALGALLLEGDNCEFWVALGCLSGHNALKQHAFIRGLQL
DVSLAMGWAYLGKFYRKEGANQLAKQAFDCARSINPSLSLPWAGMAADFHARGLAPDEAF
EGCLRAVQTFPLAQFQIGLAKLSLLSGHLSSSQVFGAIKQAVQHAPHFPESHNLHGLACE
ARFDYQSAAAAYRLACCAISSVSAIVPNSHARDISLNLARSLCKAGNAQDALLECENLKK
EGLLDTEGLQIYALSLWQLGKFDLALSVVRSLAVSISTMKQTSVAAPVGFICRMLYFMSG
VDSVISNILEMPKELFQNSGISFIVSAINALDQMNRLESVVSSSRSVLRSHEEITGMHFL
IALGKLIRHGTEFCLGFQSGVAHLKKCLHKIPNSILLRNLLGYLLLSSTDWNDSHLATRC
CNVDAPDLDFDLPNQGLKSASEILGAGAVACYAIGNKNPKFSFPTCTYHCMNEPGAIQQL
QKCFHREPWNPNFRYLLVLNLLQKAREERFPHHLCVILERLISVALSSGLYSKTDMSYRN
YQLLLCASEISLQIGNKISCINHAKTASVLLLPDAYLFFSHLQLCRAYAAEGDIRNLQKE
YTRCLELKTNYQIGWICLKFIESRYDMETDSNILELSFRDSSKERNYSWNMWMAIFNMVW
GLISIWNQDFLSAEEFLDQACSLVGTESCFVFCHGATCMELARQLCGSQFLSLAIKSLTK
AQEASLVPLPIVSLLLAQAEGSLGSKEKWERNLRLEWFSWPPEMRPAELFFQMHLLARQS
KSAPNSTSNIEFCQSPERWVLRAIHTNPSCVRYWKVLQKF
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatcggaagaagaaagcgaagaagctgttcagagacggttggaggagtcagtg
aatgcgtctcccgatgatccctctcttcattttgaacttggactcttgttgtgggagaaa
gagggagaatccgagaaggagaaggcggcggagcacttcgtgatatcggccaaactaaac
cctcaaaacgctgcggctttcagatttcttggccattactacgcccatttctccgttgat
gccaagcgggctctcaagtgttatcagagagctgtctccctaaaccccgatgattcacat
tccggagagtctttgtgtgatttattggacaatgaaggaaaggagagtttggaggtgtct
gtgtgcagagacgcttcagaaaagtcgcctaaggctttctgggcgtttcggagactgggt
tacgtgcagcttcatcaaaacaaatggtctgaagctgtactgtgccttcaatatgctatt
cggggttatcctaccagtgctgatttatggcaagctctgggtcttgcctaccagcgcttg
ggaaggtttaccgctgctattaagtcttatgagcgagccattgaattggacaatacaaat
gtgtttgcattggttgaaagtggaaacatatttttgacgcttagttcctttaaaaaggga
gttgagcagtttcggcaagctctagagatttcacctcagagtgtgtctgcacaatatggg
cttgcatctggtctacttggtttggcaaaggaatgtgttaacttaggggcattcagatgg
ggagcttcgttattagaggaggcatctgctgttgcaatagcaagtactcatttggctgga
aatatatcatgtatttggaagttgcatggtgatattcagcttgcatatgccaagtgtttt
ccctggacacaggaaagccagggtttagaacttgatgcggaagcctttaacacttccatc
ctttcctggacgcggacttgctgtttagctgccggatctgcaaaatgttcttatcagcgg
gctctgcacctggccccatggcaacctaacatttattctgatattgcaataactgcagat
ctgatattgtctttggacaagtgttctgggagcaacttaactgcttggaaactgtctgag
aagatggctttgggggccttgttacttgagggtgacaattgtgagttttgggtggccttg
ggatgtctgtctggccataatgcattgaaacaacatgcctttatcaggggattgcaattg
gatgtttctctagctatgggttgggcatacttggggaagttttatcggaaagagggtgca
aaccaattggcaaaacaagcatttgattgtgctagaagtataaatccttcgctttcatta
ccatgggcaggcatggcagctgattttcatgctaggggtcttgcaccagatgaggctttt
gagggctgcttaagagctgtgcagacatttcctcttgcacagttccaaattggtcttgca
aagctttctctgttgtcaggacatctctcatcttcacaggtttttggagctatcaagcag
gctgtgcagcatgcacctcactttcctgaatcacataatttacatgggctggcttgtgag
gcacgatttgattatcaatctgctgctgctgcttatcggttggcatgctgtgcaatcagc
agtgtttcagctattgtcccaaattctcatgccagagatatatcacttaatttggcaaga
tctctgtgtaaggcagggaatgctcaagatgctttgctggaatgtgagaatttgaagaaa
gaaggtttgcttgacacggagggtttgcaaatatatgctctctctttatggcaacttggc
aaatttgacttggccctttccgtggtgagaagtctggcagtgagtatttctaccatgaaa
cagacatctgtggccgccccagttggtttcatatgtagaatgctatatttcatgtctgga
gtggattcagtaatcagtaatatcctggaaatgccaaaggaactctttcagaattcagga
attagttttatagtgtctgctattaatgctcttgatcaaatgaatcggctagagtcagtt
gtttcaagcagccgatcagttcttagatctcatgaagagatcactggaatgcactttttg
atagcacttggtaaactcatcagacatgggacagagttctgtcttggatttcagagtgga
gttgctcatcttaaaaaatgtcttcacaagatccctaacagtattttgttgaggaacctg
cttggttatcttctgctctctagtacggattggaatgatagtcatcttgcaactaggtgc
tgcaatgtagatgccccagaccttgattttgaccttccaaatcaaggtttaaaatcagca
agtgaaatcctgggtgccggagcagttgcttgttatgcgataggcaataagaatccaaag
ttttcttttccaacatgtacataccactgcatgaatgaacctggagctattcaacagctg
caaaaatgcttccatcgagaaccctggaatcctaattttcggtacttgcttgtactcaat
cttctacaaaaggcacgcgaagagagatttcctcatcatctctgtgttatacttgaacgg
ctaatatctgtggcactttccagtggactgtactcaaagacagacatgtcttatagaaac
taccagcttttactctgtgcttctgagatcagcctgcaaattgggaataaaattagctgc
atcaaccatgccaaaactgcttcagtacttttgcttcctgatgcatatctattcttttca
cacttacaattgtgtcgtgcctacgctgctgaaggtgatattagaaatcttcagaaagag
tatacaagatgcttggaactcaagaccaattatcagattggttggatatgtctgaaattt
attgaatcacgatatgatatggaaactgattcaaacattttagaactgagcttcagagat
tcctcaaaagagaggaattattcgtggaatatgtggatggccatatttaatatggtgtgg
ggtctgatttctatatggaaccaggatttcctttctgcagaagagtttcttgaccaagct
tgttctttggttggtactgagagctgctttgttttctgtcatggtgctacctgcatggaa
cttgccaggcagttgtgtggttcacagttcctatcgcttgctattaagagtctcactaaa
gctcaagaagcctctctcgttcctctgccaattgtctcactattgctggctcaggcagag
ggaagccttggttctaaagaaaagtgggagagaaacctccgtcttgagtggttttcttgg
ccaccagaaatgaggcccgcagaactcttctttcaaatgcatctgcttgcaagacaatct
aaatcagcaccgaactctacatccaacattgagttctgtcagagtccagagagatgggta
ctccgagcaattcataccaacccttcttgtgtaagatattggaaggttttgcagaaattt
tag
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integrated database retrieval system
