Juglans regia (English walnut): 109001967
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Entry
109001967 CDS
T05245
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109001967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109001967
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109001967
mRNA degradation factors
5'-3' decay
Lsm complex
109001967
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
109001967
NCBI-ProteinID:
XP_018835043
UniProt:
A0A834CUU2
A0A2I4FTR0
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Position
7:complement(43048044..43050983)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEEACERVIVGEL
YCDIPLGLYIIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGSMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggccctgaagatatctacctctctacctctcttgccagttatcttgac
aagaaacttcttgtactgctgcgagatggtcgaaagctcttgggaatacttcgttctttt
gatcaatttgccaatgctgtccttgaggaagcatgtgagagagttattgttggtgagctt
tattgtgatattcctttgggcctatatataatccgtggagagaatgttgttttaattggt
gagctggacttagagagagaggaacttcccccacatatgactcgtgtttctgaagcagaa
attaaaagggcacagaaagcagaaagggaagctacagatcttaaaggttccatgaggaaa
agaatggaattccttgacctggattga
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