Juglans regia (English walnut): 109002414
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Entry
109002414 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109002414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109002414
03009 Ribosome biogenesis [BR:
jre03009
]
109002414
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109002414
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
109002414
Complex B
109002414
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
Helicases
109002414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
PRAI
Motif
Other DBs
NCBI-GeneID:
109002414
NCBI-ProteinID:
XP_018835696
UniProt:
A0A2I4FVM8
LinkDB
All DBs
Position
5:complement(5660587..5671320)
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AA seq
542 aa
AA seq
DB search
MSYVPPHLRNSGSTPSTTGTSSLTLDADRSKLSKSSTDFRQSSRSLRLAVPEPVFPHWNP
SERVLRMQPEQVENVRLRLNVDVTVTSDSSPAPAPVESFTDMCLDPSIMKDIAFHEYTTP
TSIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQSPVRRGDGPLALVLAPTR
ELAQQIEKEVKAFSRSLDSLKTAIVVGGTHIKEQRSELKAGVDIVVATPGRFIDHLQQGN
TSISRVSFVVLDEADRMLDMGFEPQIREVMCNLPEKHQTLLFSATMPTEIEALAQEYLTN
PVQVKVGKVSSPTANVSQKLEKVPDSEKIDRLLDLLVEEATQAERSGHPLPLTIVFVERK
TRCDEVAEALVVQGLHAVALHGGRSQSEREAALRDFRNGSTKILVATDVASRGLDVTGVS
HVINLDLPKTMEDYVHRIGRTGRAGSMGQATSFFTDRDMFLVANIKKAIADVGSGNPVAY
ATGKVARRKEREEAAAQKEARTALSKLSLMGPTEISIEDKYRFMIAASNNKGEGAADSAW
DD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccgcacctcaggaactcgggctcgacccccagtaccactggaact
tcgtctcttaccctagacgctgaccggagcaagctctccaagtcctccactgattttcgt
caaagctcacgttctctccgtctcgccgtgcccgaacccgttttccctcactggaatccc
tccgaacgtgttctacgcatgcagccggaacaggtcgaaaacgtccgtttgcggctcaac
gttgatgttactgtcacttcggactcctctcccgctcctgcacccgttgagtcttttacg
gatatgtgtttggatcctagcattatgaaggatatagcatttcatgaatacaccacgcct
acttcgatccaggctcaggccatgccagtcgctctcagtggaagggatttgttgggttgt
gctgaaacaggaagtggcaaaacagctgcatttgccattccgatgatacagcattgcctg
gctcaatctccggttcgccgtggtgatggacctttagcattggtactggctcctactaga
gagcttgcccagcaaatagaaaaagaggttaaagcttttagtagatctcttgactcactc
aaaactgcaatagttgtgggaggaacacacattaaagagcagaggtctgagctaaaggca
ggagtggatattgtggttgctactcctggaaggtttattgatcatttacagcaagggaac
acttccatctctagagtttcatttgtggttttggatgaagctgatagaatgcttgatatg
gggtttgagccacaaattagagaggtgatgtgtaaccttccagaaaaacatcaaactctg
ctgtttagtgcaaccatgcctacagagattgaagcattagcgcaggagtacttaactaac
cctgttcaagtgaaggttggaaaagtaagtagcccaacagcaaatgtatctcaaaaattg
gagaaggttcctgatagtgagaagattgataggcttctagatttgcttgtagaggaggca
acacaagctgaaagatccggtcatccgcttcctttaactattgtatttgtggaaaggaag
acaaggtgtgatgaagttgctgaagctttggtagtgcaaggcttacatgcagttgcgctt
catggtggtcgcagtcagagtgaaagagaggctgctctacgtgattttaggaatggctct
acaaaaatattggttgctaccgatgttgcatctcgtggtttggatgtcacaggagtttct
catgttataaatttggatcttcccaagacaatggaagactatgtgcaccggattggaagg
acagggcgtgcaggatcaatgggccaagctacttcattcttcactgatcgtgacatgttc
cttgtggcaaatataaagaaagcaattgcagatgtgggatctggcaaccctgtggcttat
gcaaccggaaaggttgcaagaaggaaggagagagaagaagcagctgcacagaaagaagca
agaactgccctgtccaaactctcactgatgggacccactgaaattagcatcgaggataag
tataggttcatgatcgcagcctctaacaataaaggagagggagctgcagatagtgcctgg
gatgattga
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