KEGG   Juglans regia (English walnut): 109002786
Entry
109002786         CDS       T05245                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
jre  Juglans regia (English walnut)
Pathway
jre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109002786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:jre03041]
    109002786
   03036 Chromosome and associated proteins [BR:jre03036]
    109002786
Spliceosome [BR:jre03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109002786
 Complex B
    109002786
 Complex C
   U2 SnRNP specific factors
    109002786
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    109002786
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 109002786
NCBI-ProteinID: XP_035541749
UniProt: A0A6P9EBM4
LinkDB
Position
15:179074..203761
AA seq 1269 aa
MDPDIAKTQEERKRLEQQLASITSLTFDTDLYGGNDRDSYVTSIPVTDDDENLDSIDNEV
ARKLASYTAPKSLLKEMPRGAGAEDDNDDAFGGFKKPQRIIDREDDYRKRRLNRVISPER
HDAFAAGEKTPDPSVRTYADVMREEALKREKEETLKRIAKKKEEEESAAKSDKATEDKGP
KRRNRWDQSQDDGAAAAKKPKTTSDWDLPEDATPGRWDATPTPGRLGDATPSASVGRRNR
WDETPTPGRLADATPAGGATPGATPAGMTWDATPKISGLATPTPKRQRSRWDETPATMGS
ATPMAGATPAAAASFTPGITPVGGVELATPTPGAINLRGAITPEQYNLLRWEKDIEERNR
PLTDEELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPLGTPLYSIPEENRGQQFDV
PKEAPGGLPFMKPEDYQYFGALLNEDDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTAL
RQLTDKARELGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVA
SALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLLD
ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL
MDALYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFK
NFWVRRMALDRRNYRQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVV
ANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGT
IKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW
MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALIHLLNYVWPNIFETSPHVINAVMEAIE
GMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEQNNVY
SRPELMMFV
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggatccggacatcgccaagacccaggaagagcgaaagcgcttggagcagcagctggca
tccatcacctccctcacgttcgacaccgatctctatggcggcaacgaccgcgattcctac
gtcacctccatccccgtcaccgacgacgatgagaacctcgactccatcgacaacgaggtc
gcccgcaagctcgcttcgtacaccgcccccaaatccctcttgaaagaaatgccccgtggt
gcaggagccgaagacgacaacgacgacgcatttgggggcttcaagaagccgcagcgcatc
atcgaccgcgaggacgattaccgcaagaggcgactcaatcgggtgatctcacccgagagg
cacgacgccttcgccgcgggggagaagactccggacccttccgtgagaacctacgcagat
gttatgagggaggaggctttgaagagggaaaaggaggagacactgaagaggattgcgaag
aagaaggaagaggaggagtctgctgccaagtctgataaggctacggaggataagggtccc
aagaggaggaataggtgggaccagtcgcaggacgatggggctgccgctgcgaagaagccg
aaaactacgtcggattgggatttgcctgaggacgctactccggggcggtgggacgcgact
cccacacccgggaggttgggcgatgccaccccatccgcgtcagtggggaggagaaacagg
tgggacgagacgccaactcctggcagattggcggatgccaccccggccggtggggctact
ccgggagcgacccctgcggggatgacctgggacgccaccccgaaaatctcgggcctcgcc
acgcccaccccaaaacggcagagatcgaggtgggacgagacgcctgctacaatgggcagt
gcaaccccaatggcaggggccactccagcagctgcagcgtcgtttacaccggggattact
cctgtcggtggtgttgagctagcaacgccgacgccaggggctatcaatttgcgtggtgcc
atcaccccggagcagtacaatttgctgaggtgggagaaggacatcgaggagaggaaccgg
ccactgacggacgaggagttggacgccatgtttccgcaggagggttataagattttggag
ccgccggcgtcctatgttcccattaggactcccgcaaggaagctgctcgcgacccccact
cctttggggactcctctgtattccatccccgaagagaatcgcgggcagcagtttgatgtg
cccaaggaagcccctggtggcttgccgttcatgaagcccgaggattaccagtactttggg
gcgttgttgaacgaggatgatgaggaggagttgtcccccgatgaacagaaagagcggaag
atcatgaagctcctgcttaaggtcaagaatgggacgcccccacagaggaaaacggcattg
cggcagcttacggataaggcaagagagcttggggccgggccgttgtttaaccggatcctg
ccgctgctcatgcaacccactttggaagatcaggagaggcatctcttggtgaaggtgatc
gacagggtgctctataagttggatgagctggtacgtccttacgtgcataagattcttgtt
gtgattgaaccgttgttgattgatgaggattattatgcgcgtgttgaagggcgagagatt
atttccaatcttagtaaagccgctggcttggccaccatgattgcggccatgcgtcccgat
atagataatattgatgagtatgtgaggaacaccactgccagagctttcagcgttgttgct
tctgctctcgggattcctgctctgttgcccttcttaaaggcggtgtgtcagagtaagaaa
tcgtggcaagctcggcacacggggattaagattgttcagcagattgccatcttgattggt
tgtgccgtgcttcctcatctgaggtctcttgtggagatcatagagcacggtctgctggac
gagaatcagaaggtgaggacaatcactgcattgtctctggctgctcttgccgaggctgct
gccccttatggtatcgagagctttgactcggtgctgaagcctttgtggaagggtatcagg
tcgcaccgtgggaaagtcttggctgcattcttaaaagccatcggttttatcatcccgctc
atggatgcactatatgccagttactacaccaaggaagttatggttattctgattcgcgag
ttccagtcgcccgatgaggaaatgaagaagattgttctgaaggtggtgaagcagtgtgtg
agtacggagggtgtggaggctgattacattcgcaacgatattcttccggagttcttcaaa
aatttctgggtcaggaggatggctttggataggagaaactacaggcagctcgtggaaacg
accgtggagattgcaaacaaagtcggtgttgccgatatagttgggagaattgtggaggat
cttaaagatgagagtgagccttacagacgaatggtcatggagaccattgagaaggtagtt
gccaacttgggtgcatctgatatcgatgctcggttggaggaacttcttattgatggaatc
ctttatgccttccaagagcagaccagtgatgatgccaacgtgatgcttaatggttttggt
gcggttgtgaatgcacttgggcagagagtgaaaccgtaccttccccagatttgtggcacc
ataaaatggcggttgaataacaagagcgcaaaggtgagacagcaagcagcggatctgata
tcgagaattgctgtggtgatgaagcagtgccaggaggaacaattgatgggtcaccttggt
gttgtactgtatgagtatctgggagaggagtatcccgaggtcctgggatctatcctagga
gctctcaaggcaattgtcaatgttattggtatgacgaagatgactcctcctataaaggac
ttgcttcctagactgacaccaattttgaagaataggcacgagaaagtccaggagaactgc
attgaccttgtcggacggattgctgaccgtggggctgagtttgttccggctagggagtgg
atgaggatttgcttcgagcttctcgagatgcttaaagcccacaagaagggtatacggcga
gccactgtgaacaccttcggctatattgccaaagccattgggccacaggatgtcctggcc
accctgttgaataatctcaaggtgcaggagcggcagaaccgtgtgtgcacaaccgtggcg
attgctatagttgcagaaacctgttctccctttacagttcttccagctttaatgaacgag
tatcgcgtgccagagcttaatgtgcaaaatggtgtcctaaaatccctctcttttctgttc
gagtatattggggaaatgggaaaagactacatctatgccgtgaccccattacttgaggat
gccctcatggatagggatttggttcacaggcagactgcggcttcagctgttaagcacatg
gccttgggggttgctggtttgggttgcgaggatgctttaatccacttgctcaactatgtg
tggccaaatatttttgagacttccccacacgtgataaatgctgtaatggaagccattgaa
ggaatgagggtggccttgggtgctgctgttgtgctaaactactgccttcaggggctgttt
catcctgctcgcaaggttagggaggtgtactggaagatttataactcgctttatattgga
gcacaagatgctcttgtggcggcttatcctgtgctggaggacgagcagaacaacgtatac
agtaggcctgagttgatgatgtttgtctga

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