Juglans regia (English walnut): 109003022
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Entry
109003022 CDS
T05245
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109003022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109003022
03041 Spliceosome [BR:
jre03041
]
109003022
03036 Chromosome and associated proteins [BR:
jre03036
]
109003022
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109003022
Spliceosome [BR:
jre03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109003022
Complex B
109003022
Complex C
U2 SnRNP specific factors
109003022
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109003022
TFTC complex
109003022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
109003022
NCBI-ProteinID:
XP_018836518
UniProt:
A0A2I4FY05
A0A833U9N4
LinkDB
All DBs
Position
12:complement(29780253..29786938)
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGSFSGGKTQEIVVARGKLLELLRPDDSGKIQTLLSVEIFGV
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
ATDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHQDLRAVIPRRADLPAERGVLIVSAAVHKQKAMFFFLLQ
TEYGDIFKVTLDHDNDRVTELKIKYFDTIPVSSSMCVLKSGHLFAASEFGNHAFYQFQGI
GDDADVESSSATLMETEEGFQPVFFQPRQLKNLLRIDQVESLMPIMDMKVVNLFEEETPQ
IFTLCGRGPRSSLRMLRPGLAISEMAVSELPGVPSAVWTVKKNVNDEFDAYIVVSFSNAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIAKVGSNRLQVVIALSGGEIVYFEVDITGQLIEVDKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPEDGMQILSVQSVSSAPESLLFLEVQASIGGEDGADHPASLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGKRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFASDQCAEGVVAVAGEALRVFTIERLGETFNETVIPLRYTP
RKFVLHPKRKLLVIIESDQGAFTAEEREAAKKECFEAVGTGENENGNMEQMENGGDEDKD
DPLSDEHYGYPKAESDRWVSSIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGTL
LAVGTAKGLQFWPKRSLAAGFIHIYRFLEDGRSLELLHKTQVEGVPTALCQFQGRLLAGI
GNVLRLYDLGKRRLLRKCENKLFPNSIVSIHTYRDRIYVGDIQESFHYCKYRRDENQLYV
FADDSVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHIGDVVTCLQKASLIPGGGECLIYGTVMGSLGALLAFTSRDDVDFFSH
LEMYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttacagcctcactctccagcgagccaccggcatagtctgcgccatcaacgga
agcttctccggcggcaagacccaagagatcgttgtcgcccgcggcaagctcctcgagctt
cttcggcccgacgacagcggtaagatccaaacccttctctccgttgaaattttcggcgtc
attaggtctttagctcagtttaggcttactgggtctcagaaagactatattgttgtcggg
tccgattccggtcgtatagttatcctcgagtacaacaaggagaagaatgttttcgacaaa
attcaccaagaaactttcgggaaatctggctgtcgtagaatagttccgggccagtacttg
gccactgatccgaagggtagggcggtgatgattggggcttgtgagaagcagaagcttgtt
tatgtgttgaatagggatacggcagcgaggctgaccatttcctctccattggaggcgcat
aaatcgcatacgatagtgtattcaatctgtggagttgattgtgggttcgataacccaata
tttgctgccatagagttggattactcggaggcagaccaggattcaactgggcaggcagca
agtgaggcccagaagaatttgactttttatgagcttgacttagggcttaaccacgtatct
aggaagtggtcggagccagttgataatggtgcaaacttacttgttactgttcccggagga
ggggatgggccgagtggtgtgttggtttgtgcggaaaattttgtgatatataaaaatcag
ggacaccaggatcttagggctgtgattcctagacgagcagatctgcctgctgagcgaggg
gttcttatagtttcagcagcagtgcataagcagaaagcgatgttcttctttctgttgcaa
acggagtatggggatatttttaaggttactctggaccatgacaatgaccgtgttacagag
ttgaagattaagtactttgatacaattccggtttcttcctccatgtgtgttctgaagtca
gggcacttgttcgctgcttcagaatttgggaatcatgctttctatcagttccaagggata
ggtgatgatgctgatgtggagtcttcatcggctacattgatggaaacagaagaaggtttc
cagccagtgtttttccagcctagacaacttaagaaccttctcaggattgaccaagtggag
agcctaatgccaataatggacatgaaagtggttaatctctttgaagaagaaacaccccaa
atatttaccctttgtgggcggggccctcgttcgtctcttagaatgttaaggcccggttta
gctattagtgaaatggctgtgtcagagcttcctggtgtgccaagtgcagtttggactgtg
aaaaagaatgttaatgatgagtttgatgcatacattgtggtgtcattctcaaatgcaact
ctcgttctttccattggtgagacagttgaagaagttagtgatagtgggtttcttgatacc
accccctcactttctgtttctttgattggtgatgattctctcatgcaagttcatcccaat
ggcattaggcatattagggaggatgggcgtatcaatgagtggaggactcctggaaagagg
acaattgctaaggttggctctaacagacttcaagtggtcattgcacttagtggtggtgaa
attgtgtattttgaggtggatattactggccaattgattgaagtggataagcatgaaatg
tcaggtgatgtggcttgtttggacattgcccctgtacctgaaggaaggcaaagatctcgt
ttccttgcggttggttcatatgacaacacaattcgtatcttatcattggaccctgaagat
ggtatgcagattctgagtgtgcaaagtgtttcttcggctccagaatctctcctttttctt
gaagtccaggcatcaataggtggggaggatggtgctgatcatcccgccagcctttttctt
aattctggtttacagaatggagttctgttcagaacagttgtagatatggtgactggtcag
ctttctgattcccggtctcgtttcttgggactgagagccccaaagctcttttctattata
gtacgaggcaagcgtgccatgctttgcttgtcaagtcgaccttggcttggttatattcac
caaggacattttcttttaacacctttatcatacgagactcttgaatatgcagcatcattt
gcctctgaccaatgtgcagaaggtgtagttgctgttgctggtgaagctttgagggttttt
accattgagagactgggagaaacatttaatgaaactgtaattcccctaaggtacacacca
agaaagtttgtacttcaccccaagcgaaaattgctggtaattattgagagtgatcaagga
gcattcacagctgaagagcgagaagctgcgaaaaaggagtgctttgaggctgttggaact
ggtgaaaatgaaaatggtaatatggagcagatggagaacggtggtgatgaggacaaagat
gatcccctctcggatgaacactatggctatcccaaggcagaatcagacaggtgggtttct
agcattagagttcttgacccaaagacagctactacaacttgtctgctggagcttcaggac
aacgaagctgcgttcagcatatgcacagtgaatttccacgataaagaatatggaactctt
ttagccgttggcacagcaaagggactacagttttggcccaaaagaagtttagctgctggt
tttattcatatttataggtttttagaggacggaaggtcacttgaactattgcacaagaca
caagtagaaggtgttcctactgctttgtgccagtttcaaggacgactacttgcaggtatt
ggaaatgttctcagattatatgatttgggcaaaagacgattgcttagaaaatgtgagaac
aaactgttccccaacagtattgtctccattcacacttatcgtgatcggatatatgttggc
gacattcaagagtcattccattactgtaagtacagacgagatgagaatcaactgtatgta
tttgctgatgatagtgttccaagatggctcactgcatcataccatatagattttgacacc
atggcaggtgcagacaagtttgggaacatttattttgtgcggttaccgcaggatgtgtcg
gatgagatagaagaagatcctactggtgggaaaataaaatgggagcaggggaagctgaat
ggagctcccaacaaggtagaggagatagtgcagtttcacattggtgatgtggtcacctgc
ttgcagaaggcatctctaattccaggtgggggagagtgcctcatatatggcactgtgatg
gggagcttgggagcattgctagcattcacctctcgcgatgatgttgacttcttttctcac
ttggagatgtatatgaggcaggaacatccgcctttgtgtggaagagatcacatggcttat
agatctgcttattttcctgttaaggatgtgatcgatggggatctatgtgagcagttccca
actctgcctctggatttgcaaaggaaaattgccgatgaattagatagaactcctggggag
atactgaagaaacttgaagaagttcgaaataagatcatttga
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