KEGG   Juglans regia (English walnut): 109003632
Entry
109003632         CDS       T05245                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
jre  Juglans regia (English walnut)
Pathway
jre03020  RNA polymerase
jre03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109003632
  09124 Replication and repair
   03420 Nucleotide excision repair
    109003632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jre03021]
    109003632
   03400 DNA repair and recombination proteins [BR:jre03400]
    109003632
Transcription machinery [BR:jre03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109003632
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109003632
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 109003632
NCBI-ProteinID: XP_018837407
UniProt: A0A2I4G0I7 A0A833XN53
LinkDB
Position
4:complement(25390125..25393549)
AA seq 243 aa
MEKGGKGFSLPTKTARKSSLKSTTAKQASLKGKDDSSAKSKRAMKVQFDIEGSLGGKFET
LPPKGDSSKWGKGDKTAKGGKGSVSKPPPPLELKIEQELPENVKCMMDCEAADILQGIQD
QMTILSKDPEFKLPPSFDRGLLYAKRVDHYTSPPSVRQVLQTLKKYGVSDGEMCVIANAC
PELVDEVFALVPSLKNKRSKLSEPLKDVLGELAKLKKSTSLESQMKSADAGNPGNVGGLG
VVD
NT seq 732 nt   +upstreamnt  +downstreamnt
atggagaaaggagggaaagggttttctctacccaccaagacagcacgaaaatcttctctc
aaatccaccaccgcaaaacaagcttccttgaaagggaaggatgatagctcagcaaagtca
aagagggcaatgaaagttcagtttgatattgaaggttcacttggtgggaagtttgaaact
ctaccacccaaaggagattcaagcaaatggggaaaaggagacaagactgctaaaggtggg
aagggttcagtttctaaaccaccaccaccactggagctcaaaattgagcaagaactccca
gaaaatgtcaaatgcatgatggactgtgaggctgcagatattttacaaggaatccaagat
cagatgaccatattatccaaagatccagaatttaaactccccccatcatttgacaggggg
ctgctgtatgccaaaagggttgaccattatacaagtcccccgtctgttagacaagttctt
cagactctcaagaaatatggtgtctctgatggcgagatgtgcgtcattgccaatgcttgt
ccagaacttgtagatgaagtttttgctctggtcccatccttgaagaataagagaagcaag
ctcagcgaacccctcaaagatgtactaggtgagctagctaagcttaagaagtcaactagc
ttagaaagtcaaatgaaaagtgctgatgctggcaaccctggtaatgtcgggggcctggga
gtagtggattga

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