Juglans regia (English walnut): 109003636
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Entry
109003636 CDS
T05245
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109003636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109003636
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109003636
mRNA degradation factors
5'-3' decay
Decapping complex
109003636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
GerPC
Motif
Other DBs
NCBI-GeneID:
109003636
NCBI-ProteinID:
XP_018837414
UniProt:
A0A2I4G0I9
LinkDB
All DBs
Position
4:complement(25330415..25339951)
Genome browser
AA seq
1346 aa
AA seq
DB search
MASSPESTNLVQNQDHQSDEQKLFKPSPNPPPHTLPTSSSTFPSPSGNLNSSPSFPTPAP
TSSTPYRMPSSSYPPPTGPSYPFHPDFLPYAPSLLDHFQHQYQNQQQHQLLPNSAYLMAL
LTTESPPSSPSNSNNDLDFPQLSMPASSPSPSNSIPSVPPPTQLLSTKLPKGRHLIGDRV
VYDIDASLQGEVQPQLAVTPITKYGSDPSLVLGRQIAVNRSYICYGLKLGNIRVLNINTA
SRSLLRGHTQRVTDMAFFAEDVHLLASAGVDGRVFVWKIDEGPDEENKPQITGKIVIAIH
IEVGGESVHPRVCWHPHKQEILMVAIGCYILKIDNTKVGKGEVFSAKKPLKCSIDELIDG
IQLVGKHDHEVTELSMCQWITSHLASASIDGSVKIWADLKALPLAIFRPHDSNPVHSVTF
LTAPHRPDHIVLITAGPLNQEVKIWTSAGEEGWLLPSDTESWKCTQTLDIKSSSEPKIED
AFFNQVISLPRAGLLLLANAKKNAIYAVHIEYGPNPAATRMDYISEFTVTMPILSLTGTS
DSLPDGEHIVQVYCIQTQAIQQYALYLSQCLPPPLDNVELEKSDSTVSRVFDGADGSASS
KAPHGCKPTEISIVNATPMPPILSSNAEIGPVVSLPANLASSEVTSSLEVALSGVETIPS
DFPSHVTAENIQTILPPLPLSPSLSRNLSGFRSPLNSNETNPPLTDHGDNQLAPESSDRR
MDFVKDSMADVPSSDKNLKKGDNSTAPSDTSMVPNPPIVFKQPTHLITPSELLSTVSSSF
ENTQISQVVNVVEAKVQDVAVNNDAKSPEAEVKVIGETGTSQSNEFDNDVSITKAPNQPP
NTSVEEVQNTMKDVPTKVGESETPVAVLPSPAPAPKGKRQKGKNAQVSGSSFPSPSPFNS
TDSSNEPGGSSGAPSIEAALPQLLAMQAVLDQLMSTQMEMKKQMNVIVSGSFSKEGKRLE
GSLGRSMEKVIRANTDALCARFQEENTKQEKLEHDRMQQITNLITNHLNKDLPAVLEKTL
KQEIALIGPAVAREITPIVEKTVSSSIMDSFQKGVGDEAVNQLEKSVSSKLEGTVTRQIQ
AQFQISGKQILQDALRSSLEASIIPAFEISCKAMFEQVDITLQKVLGKHTTAAEQQFEAT
HSPLAIALRDAINSASVITQTLSGELADGQRQLLAIAAAGANSKAVNPSVTQLRTGPLAL
LEMGEAPLDPTKELSRLIAECKFEEAFTGALHRRDVSIVSWLCSQVDLQRILSTVPLPLS
QGVLLALLQQLSYDIGNETPRKLTWMTDIALTINPADPAITVHVHPIFEQVYQILGHRRN
LPTTSASEASSIRLLMHVINSVLMSK
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctcctgaaagcacaaatcttgttcaaaatcaagatcaccagagtgatgag
cagaagctcttcaaaccctcacccaatcctcctcctcatacactccctacttcttcttca
acatttccttctccttctggaaatttgaattcctccccatcttttcctacacctgctcct
acttcatctactccttatcgcatgccttcatcctcatatcctccacccactggcccttct
taccctttccaccctgacttcctcccttacgcaccttccctactcgaccatttccagcac
cagtatcagaaccagcagcagcaccagcttcttcccaatagtgcatatttgatggctctc
ttgacaaccgaaagtcctccttcctccccctccaactctaataatgatcttgatttccct
cagctttctatgcccgcgtcttcaccttcgccttcgaacagtatcccttccgtaccacct
cccacccagttactcagcaccaaactccccaagggacgccatttgatcggtgaccgtgtt
gtttacgacatcgatgccagcctgcaaggcgaagtgcagccccagcttgcagtcactccc
atcaccaagtacggctccgatcccagcctagttcttggccgtcagattgctgtcaataga
tcttacatatgttatggtctcaagctgggtaatatacgcgtccttaacataaatactgcg
tcaagatctttgcttcgtggccacacacagagagtaactgatatggctttcttcgccgag
gatgttcaccttttggccagtgctggtgtagatggacgagttttcgtatggaagatcgat
gaaggcccagatgaggaaaacaaacctcaaattacaggcaaaattgtcattgctatccat
atagaagtaggaggggaatcggtccacccacgagtgtgttggcatcctcacaaacaagaa
attttgatggttgctattggatgttatatccttaaaattgacaacacaaaagttggaaag
ggggaagtattttcggcaaagaaacctcttaaatgctccattgatgaactaattgatggg
atccaattggttggtaaacatgatcatgaagttacagagttgtcaatgtgccaatggata
acaagccacttagcttcagcatcgattgatggctcggtgaagatttgggcagacctcaag
gcactaccacttgcaatattcaggccccatgatagcaatcctgtgcattctgtgactttc
ttgactgcccctcaccgtcctgatcacattgttcttattacagcggggccactgaatcag
gaagtgaaaatatggacctctgcgggtgaggagggctggttgttgcctagtgatactgaa
tcatggaagtgtactcaaactttggacataaagagttcttctgaacccaagattgaggat
gcattctttaatcaagtcatatcgttgccccgtgcaggccttttattacttgcaaatgcc
aagaagaatgctatatatgctgtacacatagaatatggacctaatccagctgcaacccgc
atggattatatttccgagtttacggtcacgatgcctatcttgagtcttactggaactagt
gacagtttaccagatggagaacatattgtccaggtctactgcatccaaacacaagccatt
cagcaatatgcactttacctatctcagtgcctgccaccacccctagacaatgtggagttg
gagaaatctgactccactgtttctcgtgtatttgatggtgctgatggttctgcttcttcc
aaagcacctcatggatgtaaaccgactgagatatctattgttaatgcaactcctatgcca
cctattctttcgagcaacgctgaaattggcccagtagtgagccttcctgcaaacttggct
tcttctgaggttactagctcgctggaagttgctctttctggtgtggaaacaataccaagt
gattttccttctcatgttacagcagaaaatatccaaactatattacctccccttcctttg
agtccaagcttaagtcgcaatttatctggttttagaagcccgttaaatagcaatgagact
aatccgcctctcactgatcatggtgataaccagttagctcctgaatcatctgatcggaga
atggactttgtcaaagatagcatggctgatgtgcctagctcagataaaaatttgaagaag
ggtgataatagtactgcaccaagtgatacttctatggttcccaatcctcctatagtcttt
aaacagccaacgcatctgataactccatcagagctattatctacagtttcttcatcgttt
gagaatacccaaattagtcaagttgtgaatgtggtagaggcaaaggttcaagatgtggca
gtaaacaatgatgcaaaaagtcctgaagcagaggttaaagtcattggtgagacaggaacc
agtcaaagtaatgagtttgataatgatgtcagtattactaaggcaccaaaccaacctcct
aacacttctgtggaagaagttcaaaacacgatgaaagatgtacccacaaaggttggcgaa
tcagaaactcccgttgcagttttgccatctcctgcaccagctccgaaaggaaagagacaa
aagggtaaaaatgctcaagtgtctggttcatctttcccttctccaagtccttttaactcc
acagattcatcaaatgaaccaggtggcagttcaggtgccccatctatagaagctgctttg
cctcagttattggctatgcaggcagtgcttgatcagttaatgagcacacaaatggaaatg
aagaagcagatgaatgtgattgtttctggctcattttcgaaagaaggtaaaagactagag
ggatccttgggccggagcatggagaaagttatcagggctaacactgatgctttgtgtgct
cgtttccaagaggaaaacacgaagcaggagaagttagaacacgaccgtatgcagcaaata
acaaacctgatcacaaatcatttgaacaaggacttgccagctgtgcttgagaaaacttta
aagcaggaaatagctttaattggaccagctgtagctcgtgaaattactccaatagtggag
aaaacggtgtcatcgtctattatggactcattccagaaaggagtaggagatgaggcggtg
aaccaactagagaagtcagttagttcaaaactcgaaggtacggtgactaggcaaattcaa
gcacagtttcaaatttcagggaagcaaattcttcaggatgcattaaggtctagcttggaa
gcttcaatcattcctgcatttgagatttcatgcaaagctatgtttgagcaagttgatatc
acactccagaaggtgcttggcaaacacacaactgctgctgagcagcagtttgaggctaca
cattctccacttgccattgctctaagggatgcaattaattcagcatcagtaatcactcaa
acattgagtggagaattggctgacggccaacgtcagttattagccattgcagcggcaggt
gccaactcaaaagcagtaaatccctcggtaacacaattgagaactgggccattggctctt
ctcgagatgggtgaggcacctttggatccaactaaagaactgtctagattgatagctgag
tgtaaatttgaagaagcattcaccggagcccttcacagaagggatgtctcgatagtttcg
tggttatgttctcaggttgatttacaaagaattttgtcaacggtgccactccctttgagc
caaggagttctgctagctcttctccaacaactgtcttatgatattggcaacgaaacaccc
agaaagctgacatggatgacagatatagctcttaccataaacccagcagatccagcgatt
acagtgcatgtgcatcccatttttgagcaggtataccagatactgggtcatcgtcggaac
ctaccaaccacctctgcttcagaagcaagcagcatccgccttcttatgcatgtcatcaac
tctgtgttaatgagtaaatga
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