KEGG   Juglans regia (English walnut): 109003842
Entry
109003842         CDS       T05245                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03082  ATP-dependent chromatin remodeling
jre03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109003842
   03083 Polycomb repressive complex
    109003842
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:jre03036]
    109003842
Enzymes [BR:jre01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109003842
Chromosome and associated proteins [BR:jre03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109003842
   HDAC complexes
    Sin3A-HDAC complex
     109003842
    BRAF-HDAC complex
     109003842
    REST complex
     109003842
    SHIP complex
     109003842
    MiDAC complex
     109003842
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109003842
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109003842
  Chromatin remodeling factors
   NuRD complex
    109003842
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109003842
NCBI-ProteinID: XP_018837700
UniProt: A0A2I4G1D6
LinkDB
Position
2:2396864..2400590
AA seq 463 aa
MGDSIEGVSLPAAAGPDARRRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLH
RRMEINRPFPAGPADIRRFHSEDYVDFLASVTPDTLSENAFSRHTKRFNVGEDCPVFDGL
FGFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKV
HRRVLYVDIDVHHGDGVEEAFYATDRVMTVSFHKFGDFFPGTGHIKDTGWGPGKNYALNV
PLNDGMDDESFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLR
FLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIE
PCNMENLNTPKDMEKIRNMLLEQLSRIPHVPSVPFQTTPPTTQVPEEVEEDMDRRPKCRI
WNGEDYDSDPDEDEKPRHTEPNSEMRDVVDEMDEDKREGHPPS
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgggggatagcatagagggcgtgtcgctcccagccgcggcggggccagacgctaggagg
cggcgagtaacctacttctacgagcccagcatcggtgactactactacggtcagggccac
cccatgaagccccaccgcatccgcatggctcacaatctcatcgtccactactccctccat
cgtcgtatggagatcaaccgtcccttccccgccggtcccgctgacattcgccgcttccac
tccgaagattatgtcgacttccttgcctccgtcactcctgataccctctccgagaacgcc
ttctcccgccacaccaaacgcttcaatgtcggcgaggactgccctgtcttcgacggcctc
tttggattctgtcaagcctccgccggtggatccatcggcgccgccgtcaagctcaaccgc
ggcgacgccgatatcgcccttaattgggccggtggtctccaccacgccaagaagtccgaa
gcctccggtttctgctacgtcaatgatatcgtgctcggtattcttgagcttctcaaagtt
cacaggcgtgttctttatgttgatatcgatgtccaccatggagatggggttgaggaggca
ttttatgccacagacagagtcatgactgtgtcgttccataaatttggggatttctttccg
ggtaccgggcacattaaagatacaggatgggggcctgggaagaactatgccctgaatgtc
ccattaaacgatggaatggatgatgagagttttcgtggtctgtttaggcccatcattcag
aaagtaatggaggtttaccagccggatgcagttgttcttcaatgtggagcggattcactg
tctggtgacaggttggggtgcttcaacttgtctgtgaagggccatgcagattgtcttcgt
tttcttagatcttttaatgtgcctctgatggtcctgggtgggggagggtatacaatccgc
aatgttgcccgttgctggtgctacgagacagcagttgcagttggagtggagcctgataat
aaattgccttacaacgaatattatgagtattttggtccagattatactcttcacatagaa
ccatgcaacatggagaatctaaatactcccaaagatatggagaaaattaggaatatgctg
ctagagcaactttccagaataccacatgtacctagtgtacctttccagacaacaccaccc
accacacaagttccagaagaggtggaggaagacatggatcggagaccaaaatgtcgcata
tggaatggtgaggactatgactctgatcctgatgaagacgagaagcctcggcatactgaa
ccaaattctgagatgagagatgtagttgatgaaatggatgaagataaaagggaagggcat
ccaccatcttga

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