Juglans regia (English walnut): 109004017
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Entry
109004017 CDS
T05245
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03030
DNA replication
jre03420
Nucleotide excision repair
jre03430
Mismatch repair
jre03440
Homologous recombination
jre03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109004017
03420 Nucleotide excision repair
109004017
03430 Mismatch repair
109004017
03440 Homologous recombination
109004017
03460 Fanconi anemia pathway
109004017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
jre03000
]
109004017
03032 DNA replication proteins [BR:
jre03032
]
109004017
03400 DNA repair and recombination proteins [BR:
jre03400
]
109004017
Transcription factors [BR:
jre03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109004017
DNA replication proteins [BR:
jre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109004017
DNA repair and recombination proteins [BR:
jre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109004017
MMR (mismatch excision repair)
109004017
DSBR (double strand breaks repair)
HR (homologous recombination)
109004017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
DUF223
zf-CCHC_3
DUF936
zf-CCHC_2
BRCA-2_OB1
NGO_1070-like
BTD
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
109004017
NCBI-ProteinID:
XP_018837946
UniProt:
A0A2I4G224
LinkDB
All DBs
Position
2:complement(27060989..27069254)
Genome browser
AA seq
873 aa
AA seq
DB search
MAINLTEGAIMMMCRGELKAEEVKPVLQVIDVKQVSTQAQQHSNTERYRVLLSDGSHHQQ
GMLATQMNALVKEGKLQKGSVVQLTQFVCNVVQNRMIIIIVDLDMILEKMDLIGEPVSAP
RNVAVQSSIAQPGMQIGNLSSFASSSPGGRASKPNMAEASMEHPRINQSHGNTYPTNSDS
GRYAASNAPSMHPKVENSTGFPGSASLNGSYGGQNTNFRNPRPEALRPPLNTSTRQPQSG
YQQPPPMYTNRGPVARNEAPPRITPIAALNPYQGRWTIKARVTAKGELKHYNNPRGDGKV
FSFDLLDSDGGEIRATCFNAVADQFYNQIEAGKVYLISKGSLKPAQKAFNHLQNDHEIFL
ESISIIQPCFEDDSTIPQQQFHFRPISDIEGMDSNSIVDVIGIVSSISPPASIMRKNGTE
TQRRILHLKDMSGRSVELTLWGNLVNAEGQRLQNMCDSGVFPILAVKAGRVNDFNGKALG
TISTSQLFIEPNFPEAHRLKEWFDKEGRSIPSVSISRETSVGKTDSRKTISQIKDEKLGT
SEKPDWITVSATISFVKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSIEECD
YRYILQFQIQDHTGLTWVTAFQECGEEIMGMPAKSLYYLKYEEQDDDKFGEIIRKVLFTK
YIFKLKVKEETYSDEQRVKSTVVKAEKVDFASESRFLLDFMEKLKAGNYSSFASNTESIS
PNPGISGTVVGNIGNRQPTPSMNYTGNSSNAGKDFSVPSHQAGRYGNQYNSSIAAAIGTP
GSYPFCNSCGGTGHSSTNCPSIMSSPALGGSYPNRVSSGPGVGSSSGECFKCHQPGHWAR
DCPGLSTVPPAYGSSGVTPGRYGGASKQQFGGF
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggcgataaatctgacggaaggtgcgataatgatgatgtgccgcggggagctgaaggcg
gaagaggtgaagccggtgctccaggtgatcgacgtgaagcaggtgagcactcaggcacag
cagcacagcaataccgagaggtatagggtcttactctccgatgggtctcaccatcagcaa
gggatgctggccacgcagatgaatgctctcgtcaaggaagggaagttgcagaagggctct
gtcgtccagttgactcagttcgtctgtaacgtcgtccaaaaccgcatgattataatcatt
gttgatttggatatgatactggaaaaaatggatctaattggagaacctgtatcagctcca
agaaatgttgctgtacagtcctccatagctcaaccagggatgcaaattgggaatctctca
tcttttgccagcagttcacctggtggtcgggctagtaaaccaaacatggctgaggcatcc
atggagcatcctagaataaatcaatcacatggcaatacttatccaacaaattccgattca
ggaagatatgctgcatctaatgcaccttccatgcaccctaaagtggagaatagcactggg
tttccgggatcagcatccttaaatgggtcatatggtggtcagaacacaaatttccgtaac
cccaggccagaagctttgcggcctcctctaaatacctctactcgtcaacctcagtctgga
tatcaacaaccacctccaatgtacactaacagaggaccagtagctagaaatgaagctccc
cctaggataactcccattgctgctctgaatccataccagggccggtggacaattaaggct
agagtcacagcaaaaggagaacttaagcactacaataatccccgtggtgatggtaaagta
ttctcttttgatcttcttgattctgatggtggggaaattagggcaacttgctttaatgct
gtggctgatcaattctacaaccagattgaagctggtaaggtctatctgatttccaaggga
agtttaaaacctgctcaaaaggctttcaaccacctccaaaatgatcatgaaattttttta
gagagcatttcaataatacagccttgctttgaagatgatagcacaattccacagcagcag
tttcacttccgtcccataagtgatattgaaggcatggacagcaacagcattgtggatgta
attggtatcgtgtcttctatcagtccccctgcttcaataatgagaaaaaatggtactgaa
actcagaggagaatcctacacttgaaggacatgtctggccgaagcgttgaattgactctg
tggggaaaccttgtaaatgcagaaggacagagactgcaaaacatgtgtgattcaggggtt
ttccccattctggctgttaaagctggtagagtaaatgacttcaatgggaaggcactgggg
accatctctaccagtcaactatttattgaacccaattttcctgaggctcacaggctgaaa
gaatggtttgacaaggaaggaaggagcatcccatctgtctctatttccagggaaacaagt
gtgggtaagacagatagtcgcaagacaatatctcaaatcaaagatgagaagctagggaca
tctgagaagccagattggatcactgtcagtgcaaccatttcatttgtgaaggttgacaat
ttctgttacacagcatgtcctatcatgattggtgatcgacaatgcaacaaaaaggttaca
aataatggggatgggaaatggcggtgtgataggtgcgatcagtccatcgaggagtgtgat
tacaggtatatacttcagttccagatacaagaccatacaggcttaacatgggtaactgca
tttcaggaatgcggtgaggagataatgggtatgcctgcaaaaagtttgtattatttgaag
tatgaagagcaagatgatgataaatttggagaaataattcgcaaggttctatttacaaaa
tatatattcaagttgaaagtaaaggaggagacatacagtgatgaacaacgagtaaagtca
acagtggtcaaagcagaaaaggtagattttgcatctgaatccagattccttttggatttt
atggaaaagcttaaagcagggaactatagttcttttgcttcaaatacagaaagtatctct
cctaaccctggaataagtggtactgtagttgggaatattggaaataggcaaccaacacca
tcaatgaactataccgggaacagtagcaatgctggcaaagacttcagtgtaccatcacac
caagctggtcggtatggaaaccagtataatagttctattgctgctgcaattggcactcct
ggttcatatccattctgtaacagttgtgggggtactggtcatagctccacaaattgcccc
agtatcatgagtagtcctgcattaggagggagctatcctaatagagtttcctctgggcct
ggtgttggcagctcctcaggcgaatgcttcaaatgccatcaacctgggcattgggcaaga
gattgtccagggttgagcactgtacctccagcttatggaagcagtggtgttacacctggt
agatatggtggagcttcaaagcaacaattcggtggcttttga
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