Juglans regia (English walnut): 109004320
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Entry
109004320 CDS
T05245
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109004320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109004320
03041 Spliceosome [BR:
jre03041
]
109004320
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109004320
Spliceosome [BR:
jre03041
]
Complex B
Other components
Prp19-related factors
109004320
Complex C
109004320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_12
TPR_15
TPR_8
TPR_19
NRDE-2
ARM_TT21
DUF5955
Motif
Other DBs
NCBI-GeneID:
109004320
NCBI-ProteinID:
XP_018838387
UniProt:
A0A833Y1E0
A0A2I4G3A8
LinkDB
All DBs
Position
3:19636667..19647511
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AA seq
913 aa
AA seq
DB search
MIVGKEMYPSQEDLLYEEEVLRNPFSLKLWWRYLIARSDAPFKKRFVIYERALKALPGSY
KLWYAYLRERLDLVRNIPVTHSLFQALNNTFERALVTMHKMPRIWIMYLQTLTDQKLLVR
TRHTFDRALCALPVTQHDRIWEPYLVFVSQKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
VNSSLWQEAAERLASVLNDDEFYSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGIMTVVTVRDFSVIFDSYSQFEESML
AHKMEGVSSSDEEEEGEEENDVDDDEDVRLDLNLSVAKLEKKILNGFWLHDAKDIDLRIA
RLEDLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPNKAVG
KPHTLWVNFARLYENHKDIANARVIFDKAVQVNYKTVDHLATLYCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAADGSEPVQIKLYKSLRLWTFYVDLEESLGTLESTRSVYER
ILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYADLEKSLGEIDRSRGIF
VFASQFADPRSDGDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYMMQK
DQRLNLDDARDKLKQAGVAEDEMAALERQLAPAASNAKDSSRKVGFVSAGVESESDGGIK
ASANHEDIELPEGSDSEEDEKVEIAQKDVPSAVFGGLVHKRDEAEKDGEEQNKDKDGDSR
LGALERIKRQKRA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcggtaaggagatgtatccctcgcaggaggacttgctctacgaagaggaggtt
ctccgcaacccattcagccttaagctctggtggcgctacctcatcgcgcgttccgatgcc
cccttcaagaagcgattcgtcatctacgaacgagccctcaaggctcttcctggtagctac
aagctctggtacgcctatcttcgcgaacgtctcgacctcgttcgtaacatcccagtcact
cactctctcttccaagccctaaacaacactttcgaacgcgcccttgtcactatgcacaaa
atgccccgcatttggattatgtaccttcaaaccctcaccgaccagaaattgctcgtccgg
actcgccacaccttcgacagagcactctgcgccctcccggttacccagcacgaccgcatt
tgggaaccctacctcgtgttcgtcagccaaaagggtgtccctatagagacctctcttagg
gtttatcgcaggtacttgaaatacgaccctactcatattgaagatttcattgaatttttg
gttaattcgagtctttggcaagaggcagcggagcggttagcttcagttttgaacgacgat
gagttttattctattaagggaaagaccaaacataggctgtggttggagttgtgtgatttg
cttaccaggcatgccactgaagtctctggattgaatgtggatgccataattaggggtggg
attaggaagttcaccgatgaggttgggcggttgtggacctcgcttgctgagtattatatt
aggaggaatttgcacgaaaaggctagggatatatttgaggagggtatcatgaccgtggtt
actgtgagggattttagtgtgattttcgattcgtactcgcagtttgaagagagtatgctt
gctcataagatggaaggtgtgagttcaagtgatgaggaggaggagggtgaagaagaaaat
gatgttgatgatgatgaagatgttcggttggatttgaacttatcagtggccaaacttgag
aagaagatacttaatgggttctggttacatgatgccaaggatatagatttaaggattgcc
cgattagaggatctcattaatagacgacccgaattggctaatagtgttctgttacgccaa
aatcctcataatgtggaacagtggcaccgaagggtgaagctgtttgagggtaatcccacg
aagcaaatattgacttacactgaggcagtgaggacggttgaccctaataaagccgtggga
aagcctcatacgttgtgggttaattttgcccgactgtatgagaaccacaaagatattgcc
aatgccagagttatatttgacaaggctgtgcaagtgaactacaagaccgtagatcatttg
gctactttgtactgtgaatgggctgaaatggaactgaggcataagaatttcaaaggagca
cttgacttgatgaggcgggctacagcagagccctcagtagaggttaaacgaagagtggct
gctgatggttctgaaccagttcagataaagctctacaagtccttgagactttggaccttc
tacgttgatttggaagagagcttgggtaccttggaatctacccgatcagtgtacgagcgg
atactggatctaagaatagccacaccacaaattattctcaactatgcatttctgctggaa
gagcataaatactttgaagatgcattcaaggtatatgaaagaggtgtgaagattttcaag
tatccacatgttaaagacatatgggttacatatctatcaaaatttgtgaagagatatgga
aagacaaaactggagcgggcaagagagttgtttgagcatgctgttgaaacagcccctgct
gatgcagtaaaacctttgtatcttcaatatgcaaagctggaggaggattatggtctggca
aagcgagcaatgaaagtctatgatcaagcaactaaagctgttccaaacaatgagaaattg
agcatgtatgaaatttacattgctcgagcagcagagatctttggtgttccaaaaacaagg
gaaatatatgagcaggcaatagagtctggtctcccagacaaagatgtgaaggccatgtgc
ttgaagtatgcagaccttgaaaagagcttgggtgaaattgatcgttctcgtggaatattt
gtatttgcttcccaatttgcagatccgcgttctgatggggatttctggaataaatggcat
gagtttgaggtgcagcatggaaatgaagataccttcagggaaatgcttcgcattaaaagg
agtgtttctgcgagctatagtcagacgcattttatattgcccgagtatatgatgcaaaag
gatcagaggttgaaccttgatgatgcaagagacaagttgaaacaagcaggggtcgctgaa
gatgaaatggctgctctcgaaaggcagttggctcctgcagccagcaatgctaaagacagc
agcagaaaagtgggctttgtgagtgctggtgttgaatcagagtctgatggtggcataaaa
gcttctgcaaatcatgaagatatagaactgccagaaggaagtgattcagaagaggatgaa
aaggttgaaattgcgcagaaagatgttccatcagcagtttttggaggtttagttcataag
agagatgaggctgagaaagatggggaagagcagaacaaagataaggatggtgacagccgc
ctaggtgctcttgagagaataaagaggcaaaagcgagcgtga
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