KEGG   Juglans regia (English walnut): 109004959
Entry
109004959         CDS       T05245                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
jre  Juglans regia (English walnut)
Pathway
jre03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109004959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jre03019]
    109004959
Messenger RNA biogenesis [BR:jre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109004959
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109004959
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 109004959
NCBI-ProteinID: XP_018839212
UniProt: A0A2I4G5N6 A0A833WZD8
LinkDB
Position
12:complement(25900828..25903557)
AA seq 128 aa
MSWAGPEDVYLSTSLASYLDKKLLVLLRDGRKFLGILRSFDQFANAVLEEACERVIVGDL
YCDITLGLYIIRGENVVLIGELDLEREELPPHMTRVSEAEIKRAQKAEREATDLKGSMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcagggccggaagacgtctacctctcgacctctctcgccagctatcttgac
aagaaacttcttgtactgctgcgagatggtcgaaagttcttggggattcttcgttctttt
gatcaatttgccaacgccgtacttgaggaagcgtgtgagagagttatcgttggtgatctt
tattgtgacattactttgggcctatatataatccgtggagagaatgttgttttaattggg
gagttggacttggagagagaggaacttcccccacacatgactcgtgtttcagaagcagaa
attaaaagggcacagaaagcagaaagggaagctacagatcttaaagggtccatgaggaaa
agaatggaattccttgacctggattaa

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