Juglans regia (English walnut): 109005230
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Entry
109005230 CDS
T05245
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
jre
Juglans regia (English walnut)
Pathway
jre03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109005230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109005230
03036 Chromosome and associated proteins [BR:
jre03036
]
109005230
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
109005230
Coactivators
SAGA/TFTC/STAGA complex
109005230
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
109005230
STAGA complex
109005230
TFTC complex
109005230
SAGA complex
109005230
SLIK complex
109005230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Cytochrom_D1
LisH_PAC1
PALB2_WD40
Beta-prop_ACSF4
Dimer_MINDY4_N
LisH
Motif
Other DBs
NCBI-GeneID:
109005230
NCBI-ProteinID:
XP_018839597
UniProt:
A0A833URH4
A0A2I4G6R3
LinkDB
All DBs
Position
11:complement(36367043..36379637)
Genome browser
AA seq
680 aa
AA seq
DB search
MEEDQIEKFVAAYLKKKGFKQAEHAFQEELQQQQQQPSKNNSSSSISTNSLTDSDIAKHL
LTVSGLENGPAQYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLVEKGHIQEAR
TFFNSYREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVKIKICQYSYELLLQFL
HKTKLTTMLGIVNEHINFQVSPGQPSSISDDAEVVTLIGSSQDEATQINQKEIHWGLLED
SLEERLEKGGVLLSDSEKADGEIKEGELDDNKKRSVEGTKQGMPMKKLKKDKAVNATAKT
GRPEANTVSMAPRVKPELTLPVISTEVEKSILEDLRNRVQLSSVSLPSISFYTFINTHNG
LNCSSISHDGSLVAGGFSDSSLKIWDMAKLGQEAVGSVLQGENGTTSSEHFLGLNGGKRP
YTLFQGHSGPVYSATFSPLGDYLLSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSP
VGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIVTGSSDKTVRLWD
VQSGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGAIMMWDLSSGRCVTPLMGHTSCVW
TLAFSCEGSLLASGSADCTVKLWDVTTSTKVPRTEENKGGSTNRLRSLKTLPTKSTPVYS
LRFSRRNLLFAAGALSRSLE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatcagatagagaaattcgtggcagcgtacctgaagaaaaagggtttcaag
caggctgagcatgcattccaagaagaactacagcagcagcaacaacaaccgagcaagaac
aattcgtcatcttccatctccaccaattccctcactgactctgacatcgccaagcacctc
cttaccgtctccggattggagaatggtccggcccaataccaggatgggtatagcaagtta
aggtcatggacttatagttcattagatctgtacaagcatgagttgcttcgcgtgctttat
cctgtatttatccattgtttcatggatctggtggaaaaggggcatattcaagaagcaaga
acctttttcaatagctaccgtgaagaccatgaaatgatgcactcgcgagaccttcagaag
ttggaaggagttctttctccctcacatctggaggagatggaatttgctcatactcttagg
cagagcaaagtcaaaataaagatctgtcagtactcctatgagctgctgctgcagttttta
cataagacaaaattgaccacaatgcttgggattgtgaatgagcatattaactttcaagtt
tctccgggacagcccagctcaatttctgatgatgctgaagtagtaacacttattggaagc
agccaggatgaggccactcagataaatcagaaggaaatacattgggggctgcttgaagat
tctttagaagagcgcttggaaaagggaggggttttactttcagattctgagaaggcagat
ggagaaatcaaagagggggaattggatgacaataagaaaagatcagttgaaggaacaaag
caagggatgccaatgaaaaagttaaagaaggacaaggctgtaaatgcaacagcaaaaact
gggcgtcctgaggctaatactgtatctatggcaccacgggtcaaaccagagcttactttg
ccagtaatttcaacagaggtagaaaagtctatccttgaagacttgagaaaccgtgtacag
ttgagtagtgtctcattgccatccatcagcttttatacatttatcaacacgcataatggg
ttaaactgttcatcaatatcccatgatggatctttagttgctggtggattttcagattcg
tcattgaagatttgggacatggcaaagcttgggcaagaagctgttggttctgttttgcag
ggtgaaaacggtaccacttcaagcgaacattttttagggttgaatggtgggaaacggcct
tatacattatttcagggtcattcagggccagtttattctgccactttcagtcctcttggt
gattatttactttcttcctctgcagactcaacaattaggttatggagcacaaaactaaat
gcaaatcttgtctgctacaagggccataattaccctgtatgggatgttcagtttagccct
gttggccattattttgcaagtgcttcacatgatcgaactgcaaggatctggtctatggac
agaatacagcctttaagaataatggcaggacacttatctgatgttgactgtgtgcaatgg
catgccaattgcaactatattgtcactggttctagtgataaaacagttcgactgtgggat
gtacaaagtggggagtgtgtccgcattttcattggtcacaggagtatggttttgtcattg
gcaatgtcacctgatggtcggtatatggcttctggtgatgaagatggcgcaatcatgatg
tgggacctctcaagtggtcgctgtgttactcctttgatgggtcacacctcatgtgtgtgg
acgctggctttcagttgtgaaggttcactgctggcatctgggtctgctgattgcactgtg
aaattgtgggacgtgactacaagtacaaaggtgccaaggactgaagaaaacaaaggtgga
agtaccaacaggctaagatccttgaaaactcttccgactaagtctacccctgtctactca
ttgcggttttctcgaaggaatctcctatttgcagctggggccctctcaagaagcttagag
taa
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